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Australian Centre for Ancient DNA
School of Earth & Environmental Sciences
Darling Building
THE UNIVERSITY OF ADELAIDE
SA 5005
AUSTRALIA
Email

Telephone: +61 8 8313 3952
Facsimile: +61 8 8313 4364

Naracoorte Caves, South Australia


Mathematical biology is set to become a key focus of future scientific research in Australia and worldwide, due to the enormous technological advances in our ability to generate genetic data that have occurred over the past 1-2 years. The Adelaide Conference on Mathematical Evolutionary Biology aims to bridge the current gap between the fields of modern biological research and applied mathematical research in Australia, particularly in the study of phylogeny and molecular evolution. This 5 day conference is the first of an annual series which is designed to develop research collaborations within mathematical evolutionary biology, and is closely related to the very successful New Zealand Phylogenetics Meeting series (see http://www.math.canterbury.ac.nz/bio/whitianga08/).

The leading researchers from the NZ series will attend the Adelaide meeting to facilitate communication between the mathematical and biological fields - identifying key conceptual and terminology differences, and over-coming the domain barriers which currently prevent interaction of these groups within Australia.

The meeting will feature a mix of general/introductory talks with discussions of work in progress and the presentation of current biological problems/analytical methods. Attendance will be limited to 50 places to generate an informal collaborative atmosphere. Talks will be short, with extended breaks to encourage interaction and discussion, along with social BBQ's at the caves and other events (local wine tours, cave trips). Key topic areas will include phylogenetics, evolutionary rates and dates, coalescent models, population genetics, phylogenetic networks, evolutionary theory/models, search algorithms.

Attendance is very limited, and accommodation and flights will be heavily booked after the Easter break, so please plan well in advance. There will be a limit of 25 talks over the duration of the conference and students are encouraged to attend and present talks in the Student Symposium on Thursday evening.

Conference Coordinators

We kindly thank the following Sponsors

Alan Cooper
School of Earth & Environmental Sciences (Ancient DNA)

Jack Da Silva
School of Molecular & Biomedical Science (Genetics)

Jim Denier
School of Mathematical Sciences (Applied Mathematics)

Nigel Bean
School of Mathematical Sciences (Applied Mathematics)

Maria Lekis, Ph: +61 8 8303 3952 | Fax: +61 8 8303 4364
This event is sponsored by the Australian Mathematical Sciences Institute (AMSI). AMSI allocates a travel allowance annually to each of its member universities (for list of members, see www.amsi.org.au/membership.php). Students or early career researchers from AMSI member universities without access to a suitable research grant or other sources of funding may apply to their Head of Department or Head of Discipline for subsidy of travel, accommodation and registration fee for this event<quote Adelaide Conference on Mathematical Evolutionary Biology> out of the departmental travel allowance.
ARC Complex Open Systems Research Network
'characterising and analysing complex systems for explanation, predicition and control '


Program

Daily Planner 25 -30 March, 2008, last update 21/3/08

 

Speakers in order of presentation during the week

Barbara Holland, Exploratory analyses of phylogenetic data using splits and networks
Allen Rodrigo, Trees, trees, trees: big, super and diverse
Mike Hendy, Mathematical Introduction to Phylogenetics
David Penny, Some applications of mathematics for phylogenetics
Nigel Bean, The Markovian Binary Tree: A (possible) Model of the Macroevolutionary Process
Charles Pearce, Coalescence - a primer
William Wilson, A Sequence Space microarray for genome sampling in any vertebrate species
John Sved, Using linkage disequilibrium to estimate effective separation times for human populations
Aaron Darling, An introduction to genome arrangement phylogeny: theory, practice, and nature
Sandie Degnan, Riding the "Gene Express"… but, to where?
Lars Jermiin, New methods of detecting violated phylogenetic assumptions
Shlomo Moran,
Adaptive Fast Convergence - Towards Optimal Reconstruction Guarantees for Phylogenetic Trees
Matthew Phillips, Branch-length estimation bias misleads molecular dating for a vertebrate mitochondrial phylogeny
Michael Charleston, Quick-Mix Likelihood
Jessica Metcalf, Incorporating Geographic Information Systems and Ecological Niche Modeling into Phylogenetic Hypotheses
Alan Cooper, The evolutionary rates curve: What causes it and can we do anything about it?
Leon Poladian, On the use of Single-and Multi-objective Optimization in Phylogenetic Studies and the Evolution of Primates
Allen Rodrigo, Computational Biology of HIV
Minh Duc Cao, A biological compression algorithm and its application to phylogenetic study (Student talk)
Robin Holliday, The evolution of sex
Remko Leijs, Regressive evolution of an eye pigment gene in independently evolved eyeless subterranean diving beetles: application of a pseudo-gene for estimation of environmental transition times.
Kyle Armstrong, Differences in the echolocation frequency of isolated geographic groups of rhinolophoid bats: searching for their causes, and role in speciation
Zach Aandahl, Approximate Bayesian Computation (Student talk)
Cheong Xin Chan, Units of genetic transfer in Staphylococcus (Student talk)
Nic Rawlence, Temporal population demographics of heavy-footed moa (Pachyornis elephantopus) in relation to climate and habitat change in South Island, New Zealand (Student talk)
Mike Hendy, Genetic Gems from Genomic Junk - the Nested T
Alan Cooper, Does DNA evidence support a Polynesian origin for South American chickens?
Jack da Silva, Fitness Epistasis and Fitness Landscapes in a Human Immunodeficiency Virus Type 1 Protein Region

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Key note speakers:

David Penny, Professor of Theoretical Biology


Area of research: "All organisms carry their history in their genes"


Allen Rodrigo, Professor of Computational Biology and Bioinformatics and Director of New Zealand's Bioinformatics Institute at the University of Auckland, NZ

Area of research: Bioinformatics and computational biology, phylogenetics and evolutionary genetics, and the molecular evolution of viruses.

Mike Hendy, Professor of Mathematics at Massey University
Institute of Fundamental Sciences

Area of research: Phylogenetics, evolutionary rates, combinatorics

Due to personal commitments, Peter Lockhart is no longer able to attend the conference as originally advertised.

Sorry for the inconvenience.

Barbara Holland has kindly offered to present as a Keynote Speaker

Venue

BlanchCave Conference This 5 day conference will be held at Naracoorte, South Australia, Blanche Cave. Naracoorte is located midway between Adelaide and Melbourne and hosts the World Heritage Listed Naracoorte Caves. Blanch Cave is one among 26 caves in the Naracoorte Park, although not all are open to the public. The cave consists of three large chambers and has been used for many cultural events and it is within one of these chambers that our daily presentations will take place. Significant megafauna fossil deposits are contained within the cave and ancient marine fossils can be seen in the cave walls including colossal columns and stalagmites within the chambers.
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Registration

  • Standard Conference registration AUD $200.00 (includes bus transfers, lunches and BBQs)
  • Student Conference registration AUD $ 100.00 (includes bus transfers, lunches and BBQs)

No single day registration available.

Registration form download here. We are still taking registrations until the end of February or until conference is full.

Abstract: If you are interested in presenting a general introductory talk on a particular area, email your abstract to Maria (refer to contact details below) by 25th February. There is a limit of 25 talks during the conference (excluding Student Sessions on Thursday evening).

Complete, sign and return the registration form via fax (or copy by email) or post, with payment to:
Maria Lekis
The University of Adelaide, School of Earth & Environmental Sciences
Darling Building, North Terrace Campus
South Australia 5005
AUSTRALIA

Ph: +61 8 8303 3952 | Fax: +61 8 8303 4364 | Email: maria lekis at adelaide.edu.au

 

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Accommodation

Delegates should look to make their own accommodation bookings. Please refer to details below as we have negotiated a special discount rate for delegates of this conference with a few companies. You have the option of a hotel/motel style situated at Naracoorte city, a 20 minute drive from Blanche Cave (conference site). A daily bus shuttle will be specifically organised for this conference that will collect and transfer delegates from Naracoorte Town Hall to the conference site and return. Please note pick-up times under the heading 'Transport'. Outside these times, the bus shuttle will not operate and therefore you should plan for a 1-2 hour walk to or back from the conference site should you miss the shuttle. Tip: look for accommodation within close walking distance to the Naracoorte Town Hall - 95 Smith Street, Naracoorte.

  1. Country Roads Motor Inn, call toll free +61 180 008 8363: Web: http://countryroadsnaracoorte.com.au/. Price for standard single $89. Call to make bookings and quote 'University of Adelaide Conference'
  2. Comfort Inn, William MacIntosh, Ph + 61 8 8762 1644
  3. Naracoorte Holiday Park Cabins, Ph +61 8762 2128
  4. Naracoorte Hotel Motel, Ph +61 8762 2400. Single room rates with shared bathroom facilities $35.00 per night and $55.00 for twin share. Web: http://www.naracoortehotel.com.au/
  5. Visit the Naracoorte Visitor Information Centre for additional Hotel/Motels here
  6. Alternatively, for those wishing to camp there is a camping ground situated by Blanche Cave. Delegates must bring own tents. Separate female and male shower and toilet facilities with power sites are available. Cost is $6 per tent per night. Contact 08 8762 2340 and quote the conference name to place a booking at the special camp rate. Please note: Naracoorte Park has a purpose built camp site therefore you will be sharing the grounds with other travelers/visitors.
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Transport

Transfers from Adelaide to Naracoorte and return is available to delegates as part of their registration fee. Note this covers a transfer only at the start and end dates of the conference - depart Adelaide to Naracoorte Tuesday 25th March around 10am, pickup venue TBC and return Sunday 30th March, depart Naracoorte around 9:30am and transfer to Adelaide City. Rest break at Keith. Allow for a 5 hour drive.

Delegates who choose to arrive or depart outside the start and end dates of the conference will have to make their own travel arrangement to Naracoort/return.
Premier Stateliner Coach operates a daily bus service (Mon-Sat) departing Adelaide at 8:15am. Price is around $57.00 per person. Depart from Adelaide Terminal, 85 Franklin Street, Adelaide City.

Return from Naracoorte to Adelaide City Bus service operates daily Mon-Sat, departing Naracoorte at 9:30am from Battery Service Centre, 170 Smith Street Naracoorte. Please make bookings in advance to avoid the hassle of booking on the day. Check their online booking here to confirm travel times as these may differ to what is quoted above.
Premier Stateliner Coach contact phone +61 8 8415 5555 or Email: reservations@premierstateliner.com.au

There will be a daily bus shuttle to transfer delegates from their hotel/motel to Blanche Cave(conference site): Delegates should be ready outside their hotel/motel ready for pickup by 8:30am during conference days for a 9:30am start at Blanche Cave

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Site seeing in South Australia

Things to do at Naracoorte [view Naracoorte tourism site]

  • See extinct animals brought back to life at the Wonombi Fossil Centre
  • Visit the Award winning Sheep's Back Museum and Limestone Landscapes Exhibition at the Visitor Information Centre
  • View migratory birds at Bool Lagoon from the boardwalks and be sure to visit Bourne's Bird Museum along the way
  • Go for a trail ride with Limestone Coast Horse Riding
  • Visit Yulgibar Wood Gallery for quality hand crafted pieces