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Australian Centre for Ancient DNA
School of Earth & Environmental Sciences
Darling Building
THE UNIVERSITY OF ADELAIDE
SA 5005
AUSTRALIA
Email

Telephone: +61 8 8313 3952
Facsimile: +61 8 8313 4364

Adelaide Phylogenetics Conference, April 12th -16th
&
Phylogenetics Workshop, April 6th -10th, 2010

conf menus

The third annual Adelaide Conference on Phylogenetics (formerly Mathematical & Evolutionary Biology) will be held on Port Elliot beachfront, South Australia from April 12-16, 2010. This meeting follows the successful meetings held in Blanche Cave, Naracoorte 2008 and Port Elliot 2009.

The Port Elliot meeting series aims to bridge the current gap between evolutionary biologists and mathematicians in Australia, and overseas, by providing a relaxed, informal setting (with just. 50 attendees) to encourage the discussion of new results and methods. The conference is designed to allow maximum student/academic interaction, and contains a session on the analysis of datasets during the meeting itself. The emphasis is on the development and application of advanced new analytical methods, and building trans-disciplinary collaborations. Topics covered at the previous meeting include: Phylogenetics and Networks; Mathematical methods and Algorithms; Macroevolution; Evolutionary rates and dates; Genome analysis; Bioinformatics; Human evolution; Disease.

The conference features one day devoted to data analysis/recreation with scheduled activities around the Port Elliot area including wine tours, beach activities, or optional data analysis sessions. Important prizes at the Port Elliot meeting include the highly coveted Napkin Award (for the best mathematical solution to a biological problem solved at the conference).We will also repeat the extremely successful Phylogenetics Workshop for graduate students, run prior to the conference by the Australian Centre for Ancient DNA at the University of Adelaide from April 6-10 (Easter week).

This small workshop (limited to 20 attendees) features an intensive 4 day hands-on training from 4 international experts, in leading software packages for the analysis of genetic data: Dr. Alexi Drummond (BEAST), Prof. Peter Lockhart (Phylogenetic methods)Christian Anderson (Serial SimCoal), and Andrew Storfer (Landscape Genetics). These leading experts provide detailed instruction on the analysis of model and actual datasets, and there is a strong demand for places. Interested graduates are encouraged to apply for travel funds from their host institutions. Workshop graduates are strongly encouraged to attend and present in Port Elliot where they have free registration.
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Program + Abstracts. Conference enquiries: Prof Nigel Bean

Day Talk/Theme

Monday 12th:

 

All delegates travelling on the Conference Bus are to meet at the corner of Kintore Avenue and North Terrace, Adelaide City by the War Memorial statue at 11:30am.

11:30am: Google map here >> http://maps.google.com.au/maps?f=q&source=s_q&hl=en&geocode=&q=corner+of+kintore+Ave%2Bnorth+terrace,+Adelaide&sll=-25.335448,135.745076&sspn=38.351567,77.255859&ie=UTF8&hq=&hnear=North+Terrace+%26+Kintore+Ave,+South+Australia+5000&ll=-34.919508,138.613043&spn=0.034485,0.075445&z=14

The bus will depart from there at 12pm and head to the Adelaide Airport to collect additional delegates at approximately 12:30.  Meeting place for those at the Airport, please assemble on the ground floor by the escalator.  The Driver will have a placard with ‘Phylogenetics Conference’ to identify himself.

David Penny, Steffen Klaere, Mike Steel, Jessica Leigh, David Bryant, Peter Wills, Leo van Iersel  

~2:30 Lunch~

3:30pm afternoon session: Plant evolution

Peter Lockhart - Using studies of gene expression to investigate adaptive diversification of New Zealand alpine plants
Masami Hasegawa - Tempo and Mode of Chloroplast Evolution, and Seed Plant Phylogeny

 

Tuesday 13th

9:30 am Start - 5pm

-/\-/\-/\-/\-/\- Morning session: Genomics -/\-/\-/\-/\-/\-

Mike Steel - Extracting evolutionary signal from patchy genomic data and gene content
David Bryant - SNP-Maths
Kefei Chen
- The evolutionary history of bovids across Eurasia from mitochondrial DNA sequences and nuclear SNPs
Jerry Taylor - High-Throughput Genomics: Applications in Conservation biology and Phylogenomics

-/\-/\-/\-/\-/\-Afternoon session: Phylogenetics -/\-/\-/\-/\-/\-

Andrew Storfer - Host-pathogen coevolution: from genes to landscapes
Allen Chen -
Phylogenetic analysis of 43 mitochondrial genomes reveal that corallimorpharians (Anthozoa: Colallimorpharia) are not skeleton-lost coras
Steve Donnellan - MtDNA polyphyly in fruit bats - first case of incompletle lineage sorting in terrestrial mammals?
Steffen Klaere - Phylogenetic inference in the presence of horizontal transfer
Leo van Iersel - Phylogenetic networks do not need to be complex
Jessica Leigh - Congruence in Massive messy Multigene Datasets

6:00 Welcome BBQ

 

Wednesday 14th

9:30am start - 12:30 pm

-/\-/\-/\-/\-/\- Morning session: Macroevolution -/\-/\-/\-/\-/\-

Mike Lee - Molecular Clocks versus the Cambrian explosion: Wahtever remains, however improbable...
Roshni Thattengat
- Evolution of Apoptosis

-/\-/\-/\-/\-/\- after morning tea break Rate Curves -/\-/\-/\-/\-/\-

David Penny -Integratng molecular evolution over different time scales
Julien Soubrier - Phylogenomics: how to deal with strong rate heterogeneity in genetic data?

From 12:30pm: Data analysis/Recreation day
You are encouraged to bring and analyse datasets. Great opportunity for students to work with visiting experts.

 

Thursday 15th

9:30 am Start - 5pm

5th

9:30 am Start - 5pm

-/\-/\-/\-/\-/\- Morning session: Population genetics/Climate change -/\-/\-/\-/\-/\-

Alan Cooper - Climate change causes megafaunal extinctions: Evidence from ancient DNA and climate records
Nic Rawlence - Incorporating ancient DNA into Bayesian Skyline analyses: the effect of biased sampling on inferences of past population demographics
Craig Williams - The evolution of mosquito egg survival in dry conditions
Vicki Thomson - Emu Species of Australia
Corey Bradshaw - TBA

-/\-/\-/\-/\-/\- Afternoon session: Sequence evolution / Humans -/\-/\-/\-/\-/\-

Arndt von Haeseler - A different view of biological sequences evolution
Peter Wills - Origin of genetic coding
Christina Adler - The evolutionary history of human oral disease
Wolfgang Haak - What does ancient DNA tell us about human evolutionary history

 

Friday 16th

10:00am - Conference Bus departs from Pt Elliot to Adelaide. Expected time of arrival to Adelaide city, ~11:30am.

 

ABSTRACTS DUE BY
5th March, 2010

Abstract Format: 11pt Arial in MS Word document and to include Title, Author(s) (mark presenter with *) and affiliation. You can submit your abstract at the time of registering for the conference or via email here.
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Registration

Registration now open until March 19th, 2010

Registration fees

  • Phylogentics Workshop registration Early Bird $500.00 AUD (includes training manual, welcome breakfast and free entry to the Pt Elliot Conference).
    [Non Early Bird $550.00] Early Bird rate closes Feb 28th, 2010
  • Student Conference registration Early Bird $250.00AUD (includes bus transfers Ade<-->Pt Elliot, lunch and BBQ).
    [Non Early Bird $350.00] Early Bird rate closes Feb 28th, 2010
  • Full Conference registration Early Bird $350.00 AUD (includes bus transfers Ade<-->Pt Elliot, lunches and BBQ).
    [Non Early Bird $450.00] Early Bird rate closes Feb 28th, 2010

NO SINGLE DAY REGISTRATION AVAILABLE

Register your interest here. Payment registration form here
Deadline date: your registration plus full payment must reach our office no later than March 19, 2010. Late payment does not guarantee a placing.

Completed registration payment form can be returned via fax or post, with payment to:
Ms Maria Lekis, The University of Adelaide, School of Earth & Environmental Sciences
Darling Building, North Terrace Campus
South Australia 5005 AUSTRALIA

Ph: +61 8 8303 3952 | Fax: +61 8 8303 4364 | or via email to: Maria Lekis At adelaide.edu.au

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Venue

This 5 day conference will be held at the Surf Life Saving Club (SLSC), Horseshoe Bay, Pt Elliot, South Australia. Pt Elliot is located 91km south of Adelaide and is a popular holiday destination.

Phylogenetics workshop: University of Adelaide, North Terrace Campus, Mawson Building Computer Suite Rm G30 and Mawson Lecture Theatre

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Accommodation

Delegates should look to make their own accommodation bookings early and avoid dissappointment. Pt Elliot is a popular holiday destination and holiday homes get booked well in advance. You have the option of a hotel/house/unit style situated near the Conference Venue.
See here for map of Pt Elliot, to check out appropriate accommodation relavtive to Conference venue, which is at Horseshoe Bay, beach front. Below are some recommended suggestions:

Port Elliot Caravan Park
Horseshoe Bay P.O. Box 121, Port Elliot SA 5212 | Telephone: (08) 8554 2134 | Facsimile: (08) 8554 3454
Cabins booked out and only powered sites (tenting) available at this stage. Ask if any cancellations on the cabins when calling.

Hotels:

Hotel Elliot
35 The Strand, Port Elliot SA 5212 | Telephone: (08) 8554 2218
3 single rooms, 1 twin room, and 2 double rooms available. Bookings should be made as soon as possible. 

Royal Family Hotel, 32 North Tce | Port Elliot SA 5212 | Ph: (08) 8554 2219. Provides single room accommodation.

NOW OPEN! YHA Port Elliot beach House. Recently renovated into a beach house offering great budget accommodation and close to the Conference venue.

To book contact Ray & Maureen Hill, Phone +61 08 8554 1885 or Email: portelliot@yhasa.org.au

Apartments/Cottages/Housing:

Several of these apartments are holiday homes and require you to bring along sleeping bags or linen and may require you to partner up with other delegates.

1) Casa del Mar, The Esplanade Horseshoe Bay, Port Elliot SA 5212 | Ph: (08) 8554 2029 | Fax: (08) 8554 2993

2) Dolphins Court Holiday Apts, Strangways Tce Horseshoe Bay, Port Elliot SA 5212 | Ph: (08) 8554 2029
- Aprmt 10 3Bedrooms, 1double, 1x single and 2 single beds. Ref # 401070188 ($490 weekly or $100/night)
- Aprmt 8 Studio Room, 1 double Rm. ($110/night or $490 weekly)
- Aprmt 9 3Bedrooms, 3 singles and 1 double bed room ($140/night or $650 weekly)

3) Cronulla 1&2 12 Merrilli Place 2 Bedrooms, 1 double and 1 x 2 bunks, Ref # 401070134 ($80/night or $380 weekly)
-or No. 2 has 3Bedrooms, 1 x double, 2 rooms of 2 single beds ($90/night or $420 weekly)

4) Allinga 1 3 Barbara Street 2Bedrooms, 1 x 2 single+bunk and 1 Queen room. Ref #401070203 ($110/night or $560 weekly) or Allinga 2 has 2Bedroom, 1 x Queen bed and 2 singles (same cost as above)

5) South Seas Townhouses
18 Merrilli Pl. P.O. Box 3
Port Elliot SA 5212
Telephone: (08) 8554 2029

For reservations on any of the above property, contact Dodd&Page, call toll free +61 08 8554 2029 | email: doddandpage@bigpond.com..

(6) L J Hooker Victor Harbor
Ph: (08) 8552 1944. Suggested housing (again for shared accommodation), property IDs #:

  • 38FE5, 2a The Strand, 3 b/rms (2xQ; 1x double + bunk)
  • SRFE5,18 England Avenue. 4 b/rms (3xQ;1x2single)
  • 9FE5, 10a Basham Parade. 4 b/rms (1xQ +single; 2xQ;1x3 single)
  • U0FE5, 9 Henry Street. 3b/rms (2xQ and 1x bunk)

Bed & Breakfast/Guesthouses

Thomas Henry Bed & Breakfast, 8 Charteris St, Port Elliot SA 5212, Telephone: (08) 8554 3388

Trafalgar House Bed & Breakfast, 25 The Strand P.O. Box 526, Port Elliot SA 5212, Telephone: (08) 8554 3888

Yoredale Cottage, Wonderful venue! 4.5 stars, 16 Mason St, Port Elliot SA 5212, Telephone: 0411 668 155

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Adelaide Accommodation

Should you need to stay in Adelaide for connection flights back home or extended business, we recommend the below options for their close proximity to the University and affordability:

1) Mantra on Frome. approx 10mins walk to the University. Contact phone +61 8 8412 3333. Standard rooms range from AUD$110-130

2) Adelaide Riviera Hotel, North Terrace, City. Standard room is around AUD $125.00 and approx 10mins walk to the University. Contact phone +61 8231 8000 or Toll free in Australia only # 1800 061 300

3) The Vines or Grand Apartments in North Adelaide City. Standard rooms range from AUD $79-$100. approx 10mins walk to the University. Contact phone Toll free in Australia only #1300 668 400

4) The Oaks Embassy 96 North Terrace, Adelaide. 1 bedroom apartment from AUD $134.00.

4) Try the site Backpacker and Youth/Student Hostels in Adelaide where a listing of local backpackers is provided.

5) Another site for students who are willing to share accommodation - check EasyRoommate or Adelaide Backpackers Accommodation

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Transport

Transfers from Adelaide to Pt Elliot and return are available to delegates as part of their registration fee. Note this covers a transfer only at the start (Mon 12th April) and end (Friday 16th April/ or Saturday 17th depending on the number of talks) or end dates of the conference. Delegates who choose to arrive or depart outside the dates of the conference will have to make their own travel arrangement to Pt Elliot/return.

Premier Stateliner Coach operates a daily bus service. Please check their service times. Depart from Adelaide Terminal, 85 Franklin Street, Adelaide City. Service is from Adelaide City to Pt Elliot, Stop 10. Times of service are: 9:30am, 12:00pm; 3:00pm and 4:30pm. Return from Pt Elliot to Adelaide depart times are: 6:22am; 7:42am; 9:12am; 12:42pm; and 3:27pm. Allow for a 2hour drive.
Conference Bus service from Adelaide, City to Pt Elliot (allow for a 1.5 hour drive): Departs Adelaide (around 12pm ), expected time of arrival at Pt Elliot (1:30pm).

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Site seeing in South Australia

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Things to do at Pt Elliot

Wine tours TBA Optional

Discovery Trail - Port Elliot
A brochure available at the Port Elliot Historical Centre, Railway Station (between The Strand & Young Street) includes a map and outlines nearly sixty attractions in the area around Port Elliot. There are 13 sites on the Coastal Walks including Aboriginal middens, the local blowhole and Watsons Gap at the end of Boomers Beach. There is a list of 28 buildings in the heart of the town (this is the Port Elliot Red walk) including the Hotel Elliot (built 1868), the Council Chambers (1879) in The Strand, the Library (1880) and Institute (1882) in Young Street, Young's General Store (the original was built in 1853) in The Strand, the Court House (1866) and Police Station including old court room (1853). There are a further 24 places of interest surrounding the central town area (this is the Port Elliot Blue walk) and this includes a number of particularly interesting buildings at the seaside end of The Strand.

Horseshoe Bay
Go for a swim in this sheltered bay. Follow the rugged cliff around the coast and explore the little bays and beaches.

Middleton Beach
This is a good spot for experienced surfers as well as for beginners. For surf-gear hire, head to Southern Surf Shop (8554 2376; 36 North Terrace, Port Elliot) or Big Surf Australia (8554 2399; Main Road, Middleton).

In Victor Harbor (info: http://www.tourismvictorharbor.com.au/)
Go to Port Elliot Station and take one of the heritage trains. The Cockle Train travels along the oldest steel railed railway in Australia dating back to 1887. After leaving Port Elliot the train climbs to the top of the coastal cliffs and passengers then experiemce some of the most picturesque coastal scenery on the Fleurieu Peninsula, with nothing separating you from the beach below and a perfect view of the Southern Ocean. Adult single $9, return $12, cash only. Timetables available at http://www.steamranger.org.au/marketing/CT_Apr.htm. For group bookings (10 people and more, 10% discount), please call Bev (8277 6020) so they can arrange for a supplementary carriage.

Granite Island Nature Park (free entrance. Info: http://www.graniteisland.com.au/)
You can walk over the causeway to Granite Island, or even ride the 1894 double-decker horse-drawn tram (one way $5). Then the Kaiki Trail (1.5km circuit) heads to truly spectacular views on the Southern Ocean. The island is also a rookery for little penguins, and the Penguin Centre ($6) details their breeding, habits and behaviour. You can also stay until dusk and enjoy the Guided Penguin Tour, a unique opportunity to witness the penguins haul out of the water then along the shore (6.30pm-7.30pm; $12.50, bookings are essential. Phone 8552 7555).

The Steam Train
The steam train, a reminder of the origins of the town and the whole region, only runs during the school holidays but it runs three times a day from Goolwa to Victor Harbor stopping at Port Elliot.

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