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2016

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2013

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2012

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2011

  • Adler CJ, Haak W, Donlon D, Cooper A, The Genographic Consortium. Survival and recovery of DNA from ancient teeth and bones. Journal of Archaeological Science. 38:956-964 (2011). doi 10.1016/j.jas.2010.11.010.
  • Aplin KP, Hitoshi S, Alejandro A, Chinen R, Chesser T, ten Have J, Donnellan SC, Austin J, Frost A, Gonzalez JP, Herbreteau V, Catzeflis F, Soubrier J, Fang Y-P, Robins J, Matisoo-Smith E, Bastos ADS, Maryanto I, Sinaga MH, Denys C, Yap G, Van Den Bussche RA, Conroy C, Rowe K, Cooper A. Multiple geographic origins of commensalism and complex dispersal history of Black Rats. PLoS One, 6:e26357.
  • Allentoft ME, Rawlence NJ. Moa's Ark or volant ghosts of Gondwana? Insights from nineteen years of ancient DNA research on the extinct moa (Aves: Dinornithiformes) of New Zealand. Annals of Anatomy. doi: 10.1016/j.aanat.2011.04.002.
  • Balanovsky O, Dibirova K, Dybo A, Mudrak O, Frolova S, Pocheshkhova E, Haber M, Platt D, Schurr T, Haak W, Kuznetsova M, Radzhabov M, Balaganskaya, Romanov A, Zakharova T, Hernanz DF,  Zalloua P, Koshei S, Ruhlen M, Renfrew C, Wells RS, Tyler-Smith C, Balanovska E, The Genographic Consortium. Parallel evolution of genes and languages in the Caucasus region. Molecular Biology Evolution 28:2905-2920.
  • Charlton-Robb K, Gershwin, LA, Thompson R, Austin JJ, Owen K, McKenchnie, S. A New Dolphin Species, the Burrunan Dolphin Tursiops australis sp. nov., Endemic to Southern Australian Coastal Waters. PLoS One. Vol 6: 9.
  • Davidson J, Ho SYW, Bray S, Korsten M, Vulla E, Hindrikson M, Ostbye K, Ostbye E, Lauritzen S-E, Austin JJ, Cooper A, Saarma U. Late-Quaternary biogeographic scenarios for the brown bear (Ursus arctos), a wild mammal model species. Quaternary Science Reviews, 30:418-430.
  • Haber M, Platt DE, Badro DA, Xue Y, El-Sibai M, Bonab MA, Youhanna SC, Saade S, Soria-Hernanz DF, Royyuru A, Wells RS, Tyler-Smith C, Zalloua PA, The Genographic Consortium. Influences of history, geography, and religion on genetic structure: The Maronites in Lebanon. European Journal of Human Genetics 19: 334-340.
  • Hale JM, Heard GW, Smith KL, Blacket MJ, Austin JJ, Melville J. Microsatellite loci for the endangered growling grass frog (litoria raniformis), with cross amplification in other Australian frog species. Conservation Genetics Resources. Vol 3(3) p593-595.
  • Higgins D., Kaidonis J., Austin JJ, Townsend G., James H., Huighes, T., Dentine and cementum as sources of nuclear DNA for use in human identification. Australian Journal of Forensic Sciences. Vol 43:4. DOI 10.1080/00450618.2011.583278].
  • Ho SYW, Lanfear R, Bromham L, Phillips MJ, Soubrier J, Rodrigo AG, Cooper A. Time dependent rates of molecular evolution. Molecular Ecology 20:3087-3101.
  • Kemper C, Cooper SJB, Medlin GC, Adams M, Stemmer D, Saint KM, McDowell MC, Austin JJ. Cryptic grey-bellied dunnart (Sminthopsis griseoventer) discovered in South Australia: genetic, morphological and subfossil analyses show the value of collecting voucher material Australian Journal of Zoology 59(3) 127-144 http://dx.doi.org/10.1071/ZO11037
  • Lari, M., Rizzi, E., Mona, S., Corti, G., Catalano, G., Chen, K., Vernesi, C., Larson, G., Boscato, P., De Bellis, G., Cooper, A., Caramelli, D., Bertorelle, G. The Complete Mitochondrial Genome of an 11,450-year-old Aurochsen (Bos primigenius) from Central Italy. BMC Evolutionary Biology 11:32.
  • Lippold S, Knapp M, Kuznetsova T, Leonard JA, Benecke N, Ludwig A, Rasmussen M, Cooper A, Weinstock J, Willerslev E, Shapiro B and Hofreiter M. Discovery of lost diversity of paternal horse lineages using ancient DNA, Nature Communications 2:450.
  • Lorenzen ED, Nogues-Bravo D, Orlando L, Weinstock J, Binladen J, Marske KA, Ugan A, Borregaard MK, Gilbert MTP, Nielsen R, Ho SYW, Goebel T, Graf KE, Byers D, Stenderup JT, Rasmussen M, Campos PF, Leonard JA, Koepfli K-P, Froese D, Zazula G, Stafford TW, Aaris-Sorensen K, Batra P, Haywood AM, Singarayer JS, Valdes PJ, Boeskorov G, Burns JA, Davydov SP, Haile J, Jenkins DL, Kosintsev P, Kuznetsova T, Lai X, Martin LD, McDonald HG, Mol D, Meldgaard M, Munch K, Stephan E, Sablin M, Sommer RS, Sipko T, Scott E, Suchard MA, Tikhonov A, Willerslev R, Wayne RK, Cooper A, Hofreiter M, Sher A, Shapiro B, Rahbek C, Willerslev E. Species-specific responses of Late Quaternary megafauna to climate and humans. Nature 479:359-364.
  • Macqueen P, Goldizen AW, Austin JJ, Seddon JM (2011) Phylogeography of the pademelons (Macropodidae: Thylogale) in New Guinea refelects both geological and climatic events during the Plio-Pleistocence. Journal of Biogeography. 38, 1732-1747 (2011).
  • Murphy SA, Joseph L, Burbidge AH, Austin JJ. A cryptic and critically endangered species revealed by mitochondrial DNA analyses: the Western Ground Parrot. Conservation Genetics; 12(2):595-600.
  • Paplinska JZ, Taggart DA, Corrigan T, Eldridge MDB, Austin JJ. Using DNA from museum specimens to preserve the integrity of Evolutionary Significant Unit boundaries in threatened species. Biological Conservation 144: 290-297.
  • Smith KL, Hale JM, Austin JJ, Melville J. Isolation and characterization of microsatellite markers for the Litoria ewingii complex and their use in conservation and hybridization studies Conservation Genetics Resources 3(4):621-624.
  • Toon A, Austin JJ, Dolman G, Pedler L, Joseph LG. Evolution of arid zone birds in Australia: leapfrog distribution patterns and mesic-arid connections in quail-thrush (Cinclosoma, Cinclosomatidae) Molecular Phylogenetics and Evolution. Vol 62(1) p286-295
  • Wood JR, Wilmshurst JM, Worthy TH, Cooper A. Sporormiella as a proxy for non-mammalian herbivores in island ecosystems. Quaternary Science Reviews. 30:915-920.
  • Yuan Y, Shen TJ, Gupta P, Ho N, Simplaceanu V, Tam T-C, Hofreiter M, Cooper A, Campbell K, Ho, C. A Biochemical-Biophysical Study of Hemoglobins from Woolly Mammoth, Asian Elephant, and Humans. Biochemistry 50:7350-7360.
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2010

  • Adler CJ, Donlon D. Sexual dimorphism in deciduous crown traits of a European derived Australian sample. Forensic Science International. 199, 29-37.
  • Brotherton P, Sanchez JJ, Cooper A, Endicott P. Preferential access to genetic information from endogenous ancient DNA and quantitative SNP-typing from ancient hominin samples via SPEX. Nucleic Acids Research. 38:e7. doi:10.1093/nar/gkp897
  • Braley M, Goldsworthy SD, Page B, Steer M, Austin JJ. Assessing morphological and DNA-based diet analysis techniques in a generalist predator, the arrow squid Nototodarus gouldi. Molecular Ecology Resources 10: 466-474
  • Campbell KL, Roberts JEE, Watson LN, Stetefeld J, Sloan AM, Signore AV, Howatt JW, Tame JRH, Rohland N, Shen T-J, Austin JJ, Hofreiter M, Ho C, Weber RE, Cooper A. Substitutions in woolly mammoth hemoglobin confer biochemical properties adaptive for cold tolerance. Nature Genetics 42:536-540.
  • Haak W, Balanovsky O, Sanchez JJ, Koshel S, Zaporozhchenko V, Adler CJ, Der Sarkissian CSI, Brandt G, Schwarz C, Nicklisch N, Dresely V, Fritsch B, Balanovska E, Villems R, Meller H, Alt KW, Cooper A, The Genographic Consortium. Ancient DNA from European early Neolithic farmers reveals their near eastern affinities. PLoS Biology. 8(11).
  • Haak W, Brandt G, Meyer C, De Jong HN, Ganslmeier R, Pike AWG, Meller H, Alt KW Die schnurkeramischen Familiengräber von Eulau – ein außergewöhnlicher Fund und seine interdisziplinäre Bewertung. Tagungen des Landesmuseums für Vorgeschichte Halle, Band 04, pp. 80-89.
  • Macqueen P, Seddon JM, Austin JJ, Hamilton S, Goldizen AQ Phylogenetics of the pademelons (Macropodidae: Thylogale) and historical biogeography of the Australo-Papuan region. Molecular Phylogenetics and Evolution 57(3):1134-1148
  • Melé M, Javed A, Pybus M, Calafell F, Parida L, Bertranpetit J, The Genographic Consortium. A New Method to Reconstruct Recombination Events at a Genomic Scale. PLoS Computational Biology 6(11): e1001010. doi:10.1371/journal.pcbi.100101 0
  • Qin Z, Yang Y, Kang L, Yan S, Cho K, Cai X, Lu Y, Zheng H, Zhu D, Fei D, Li S, Jin L, Li H. The Genographic Consortium. A mitochondrial revelation of early human migrations to the Tibetan Plateau before and after the last glacial maximum. >American Journal Physical Anthropology 143 (4): 555-69. doi: 10.1002/ajpa.21350
  • Worthy, T.H., S.J. Hand, J.M.T. Nguyen, A.J.D. Tennyson, J.P. Worthy, R.P. Scofield W.E. Boles & M. Archer, 2010. Biogeographical and phylogenetic implications of an Early Miocene wren (Aves: Passeriformes: Acanthisittidae) from New Zealand. Journal of Vertebrate Paleontology 30: 479-498; DOI: 10.1080/02724631003618033.
  • Zhadanov SI, Dulik MC, Markley M, Jennings GW, Gaieski JB, Elias G, Schurr TG; The Genographic Project Consortium.Genetic heritage and native identity of the Seaconke Wampanoag tribe of Massachusetts American Journal of Physical Anthropology 142(4):579-589.
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2009

  • Austin JJ, Arnold EN, Jones CG (2009) Interrelationships and history of the slit-eared skinks (Gongylomorphus, Scincidae) of the Mascarene islands, based on mitochondrial and nuclear gene sequences. Zootaxa (2153):55-68 
  • Boessenkool S, Austin JJ, Worthy TH, Scofield P, Cooper A, Seddon PJ & Waters JM. (2009). Relict or colonizer? Extinction and range expansion of penguins in southern New Zealand. Proceedings of the Royal Society B doi:10.1098/rsbp.2008.1246
  • Barnett R, Shapiro B, Barnes I, Ho SYW, Burger J, Yamaguchi N, Higham T, Wheeler HT, Rosendahl W, Sher AV, Sotnikova MV, Kuznetsova T, Baryshnikov GF, Martin LD, Harington CR, Burns J, Cooper A. Phylogeography of lions (Panthera leo) reveals three distinct taxa and a late Pleistocene reduction in genetic diversity. Molecular Ecology 18:1668-1677
  • Bunce M, Worthy TH, Phillips MJ, Holdaway RN, Willerslev E, Haile J, Shapiro B, Scofield P, Drummond A, Kamp P, Cooper A. The evolutionary history of the extinct ratite moa and New Zealand Neogene paleogeography. Proceedings of the National Academy of Sciences, USA 106(49):20646-20651 (2009)
  • Decker JE, Pires JC, Conant GC, McKay SD, Heaton MP, Chen KC, Cooper A, Vilkki J, Seabury CM, Caetano AR, Johnson GS, Brenneman RA, Hanotte O, Eggert LS, Wiener P, Kim J-J, Kim KS, Sonstegard TS, Van Tassell CP, Neibergs HL, McEwan JC, Brauning R, Coutinho LL, Babar ME, Wilson GA, McClure MC, Rolf MM, Kim JW, Schnabel RD, Taylor JF. Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics. Proceedings of the National Academy of Sciences, USA doi:10.1073/pnas.0904691106
  • Denham T, Atchison J, Austin J, Bestel S, Bowdery D, Crowther A, Dolby N, Fairbairn A, Field J, Kennedy A, Lentfer A, Matheson C, Nugent S, Parr J, Prebble M, Robertson G, Specht J, Torrence R, Barton H, Fullagar R, Haberle S, Horrocks M, Lewis T, Matthews P (2009) Archaeobotany in Australia and New Guinea: Practice, potential and prospects. Australian Archaeology 68: 1-10.
  • Endicott P, Sanchez JJ, Pichler I, Brotherton P, Brooks J, Egarter-Vigl E, Cooper A, Pramstaller P. Genotyping human ancient mtDNA control and coding region polymorphisms with a multiplexed Single-Base-Extension assay: the singular maternal history of the Tyrolean Iceman. BMC Genetics 10:29 doi:10.1186/1471-2156-10-29 (2009).
Image on left
  • Haile J, Froese D, MacPhee RDE, Roberts RG, Arnold LJ, Rasmussen M, Nielsen R, Brook BW, Robinson S, Demuro M, Gilbert MTP, Munch K, Reyes AV, Austin JJ, Cooper A, Barnes I, Möller P Willerslev E. Ancient DNA reveals late survival of mammoth and horse in interior Alaska, Proceedings of the National Academy of Sciences, USA 106(52):22352-22357 (2009)
  • Orlando L, Metcalf J, Alberdi MT, Telles-Antunes M, Bonjean D, Otte M, Martin F, Eisenmann V, Mashkour M, Morello F, Prado JL, Salas-Gismondi R, Shockey BJ, Wrinn PJ, Vasil’ev SK, Ovodov ND, Cherry MI, Hopwood B, Male D, Austin JJ, Hänni C, Cooper A. Revising the recent evolutionary history of equids using ancient DNA. Proceedings of the National Academy of Sciences,USA 106(51):21754-21759 (2009)
  • Rawlence NJ, Wood JR, Armstrong KA, Cooper A 2009 DNA content and distribution in ancient feathers and potential to reconstruct the plumage of extinct avian taxa.Proceedings of the Royal Society of London Series B, 276, 3395-3402.
  • Slater GJ, Thalmann O, Leonard JA, Schweizer RM, Koepfli K, Pollinger JP, Rawlence NJ, Austin JJ, Cooper A, Wayne RK.  Evolutionary history of the Falkland Island Wolf. Current Biology 19(20):R937-R938 (2009)
  • Sands CJ, Lancaster ML, Austin JJ, Sunnucks P (2009) Single copy nuclear DNA markers for the onychophoran Phallocephale tallagandensis Conservation Genetics Resources DOI 10.1007/s12686-009-9004-0,
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2008

  • Stewart JR, Cooper A. Ice Age refugia and Quaternary extinctions: An issue of Quaternary evolutionary palaeoecology. Quaternary Science Reviews. doi:10.1016/j.quascirev.2008.10.005
  • Gongora J, Rawlence NJ, Mobegi, VA, Jianlin H, Alcalde JA, Matus JT, Hanotte O, Moran C, Larson G, Austin JJ, Ulm S, Cooper A. Reply to Storey et al.: More DNA and dating studies needed for ancient El-Arenal-1 chickens. PNAS  105(48): e100
  • Wood JR, Rawlence NJ, Rogers, GM, Austin JJ, Worthy TH., Cooper A. Coprolite deposits reveal the diet and ecology of the extinct New Zealand megaherbivore moa (Aves, Dinornithiformes). Quat. Sci. Rev. doi:10.1016/j.quascirev.2008.09.019
  • Krause J, Unger T, Nocon A, Kolokotronis SO, Slatkin M, Paabo S, Hofreiter M, Bray S, Cooper A. et al, 'Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary', BMC Evolutioarny Biology. doi 10.1186/1471-2148-8-220
  • Orlando L, Male D, Alberdi MT, Prado JL, Prieto A, Cooper A. & Hanni C. Ancient DNA Clarifies the Evolutionary History of American Late Pleistocene Equids. Journal of Molecular Evolution. doi 10.1007/s00239-008-9100-x
  • Gongora J, Rawlence NJ, Mobegi VA, Jianlin H, Alcalde JA, Matus JT, Hanotte O, Moran C, Larson G, Austin J, Ulm S, Cooper A. Indo-European and Asian origins for modern Chilean and Pacific archaeological chickens revealed by mtDNA. Proceedings of the National Academy of Science USA doi 105:10308-10313
  • Zalloua PA, Platt DE, El Sibai M, Khalife J, Makhoul N, Haber M, Xue Y, Izaabel H, Bosch E, Adams SM, Arroyo E, López-Parra AM, Aler M, Picornell A, Ramon M, Jobling MA, Comas D, Bertranpetit J, Wells RS, Tyler-Smith C. The Genographic Consortium. Identifying Genetic Traces of Historical Expansions: Phoenician Footprints in the Mediterranean. American Journal Human Genetics. PMID: 18976729.
  • Behar DM, Blue-Smith J, Soria-Hernanz DF, Tzur S, Hadid Y, Bormans C, Moen A, Tyler-Smith C, Quintana-Murci L, Wells RS. The Genographic Consortium. A novel 154-bp deletion in the human mitochondrial DNA control region in healthy individuals. Human Mutation PMID: 18629826
  • Behar DM, Villems R, Soodyall H, Blue-Smith J, Pereira L, Metspalu E, Scozzari R, Makkan H, Tzur S, Comas D, Bertranpetit J, Quintana-Murci L, Tyler-Smith C, Wells RS, Rosset S. The Genographic Consortium. The dawn of human matrilineal diversity. American Journal Human Genetics. 82:1130-40.
  • Zalloua PA, Xue Y, Khalife J, Makhoul N, Debiane L, Platt DE, Royyuru AK, Herrera RJ, Hernanz DF, Blue-Smith J, Wells RS, Comas D, Bertranpetit J, Tyler-Smith C. The Genographic Consortium. Y-chromosomal diversity in Lebanon is structured by recent historical events. American Journal Human Genetics. 82:873-82
  • Gan RJ, Pan SL, Mustavich LF, Qin ZD, Cai XY, Qian J, Liu CW, Peng JH, Li SL, Xu JS, Jin L, Li H. The Genographic Consortium. Pinghua population as an exception of Han Chinese's coherent genetic structure. American Journal Human Genetics. 53:303-13 (2008)
  • Parida L, Melé M, Calafell F, Bertranpetit J. The Genographic Consortium. Estimating the ancestral recombinations graph (ARG) as compatible networks of SNP patterns. Journal Computer Biology 15:1133-54. PMID: 18844583
  • Shoo LP, Rose R, Doughty P, Austin JJ, Melville J.  Diversification patterns of pebble-mimic dragons are consistent with historical disruption of important habitat corridors in arid Australia. Molecular Phylogenetics and Evolution 48:528-542
  • Worthy TH, Lee MSY. Affinities of Miocene (19-16 Ma) waterfowl (Anatidae: Manuherikia, Dunstanetta and Miotadorna) from the St Bathans Fauna, New Zealand. Palaeontology 51(3): 677-708. doi: 10.1111/j.1475-4983.2008.00778.x.
  • Wood JR, Worthy TH, Rawlence NJ, Jones SM, Holdaway RN, Read SE. A deposition mechanism for Holocene miring bone deposits, South Island, New Zealand. Journal of Taphonomy 6: 1-20.
  • Wilmshurst JM, Anderson AJ, Higham TFG, Worthy TH.. Dating the late prehistoric dispersal of Polynesians to New Zealand using the commensal Pacific rat. Proceeding of the National Academy of Sciences 105(22): 7676-7680.
  • Holdaway RN, Worthy TH. The Late Quaternary avifauna. Pp, 445-492, in Winterbourn, M. J., Knox, G. A., Burrows C. J. & Marsden, I. D. (eds), The natural history of Canterbury, 3rd edition. Canterbury University Press, Christchurch, 926 pp. (Book Chapter)
  • Worthy TH, Tennyson AJD, Hand SJ, Scofield RP. A new species of the diving duck Manuherikia and evidence for geese (Aves: Anatidae: Anserinae) in the St Bathans Fauna (Early Miocene), New Zealand. Journal of the Royal Society of New Zealand 38(2): 97-114.
  • Worthy TH, Wragg GM. A new genus and species of pigeon (Aves: Columbidae) from Henderson Island, Pitcairn Group. Pp 499-510, in: Clark, G., Leach, F., O’Connor, S. (eds), Terra Australis 2. Islands of Inquiry: Colonisation, seafaring and the archaeology of maritime landscapes. ANU E Press, The Australian National University, Canberra. 510 pp.
  • Worthy TH. Pliocene waterfowl (Aves: Anseriformes) from South Australia and a new genus and species. Emu 108: 153-165.
  • Wood JR, Rawlence NJ, Rogers G, Austin JJ, Cooper A, WorthyTH. Coprolite deposits reveal the diet and ecology of the extinct New Zealand megaherbivore moas (Aves, Dinornithiformes). Quaternary Science Reviews 27: 2593-2602.
  • Worthy TH, Olson S, Smith T. 2008. A reassessment of the fossil goose Anser scaldii Lambrecht, 1933 (Aves: Anatidae). Bulletin of the British Ornithologist’s Club 128(4): 228-232.
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2007

  • Larson, G., Albarella, U., Rowley-Conwy, P., Schibler, J., Tresset, A., Vigne, J-D., Edwards, C.J., Schlumbaum, A., Dinu, A., Balacsescu, A., Dolman, G., Tagliacozzo, A., Manaseryan, N., Miracle, P., Van Wijngaarden-Bakker, L., Masseti, M., Bradley, D.G. & Cooper, A., Ancient DNA, pig domestication, and the spread of the neolithic into Europe. Proceedings National Academy of Sciences 13(48) (2007)
  • Brotherton, P., Endicott, P., Sanchez, J.J., Beaumont, M., Barnett, R., Austin, J., Cooper., A., Novel high-resolution characterization of ancient DNA reveals C>U-type base modification events as the sole cause of post mortem miscoding lesions, Nucleic Acids Research.doi 10.1093/nar/gkm588 (2007)
  • Kowalchuk GA, Austin JJ, Gooding PS & Stephen JR (2007) Valid Recovery of Nucleic Acid Sequence Information from High Contamination Risk Samples – Ancient DNA and Environmental DNA. In: Perspectives in Bioanalysis, Volume 2 - New High Throughput Technologies for DNA Sequencing and Genomics (ed. K. Mitchelson), Macmillan
  • Larson, G., Cucci, T., Fujita, M., Matisoo-Smith, E., Robins, J., Anderson, A., Rolett, B., Spriggs, M., Dolman, G., Kim, TH., Thuy, N. T.D., Randi, E., Doherty, M., Due, R. A., Bollt, R., Djubiantono, T., Griffin, B., Intoch, M., Keane, E., Kirch, P., Li, K.T., Morwood, M., Pedrina, L.M., Piper, PJ., Rabett, R.J., Shooter, P., Van den Bergh, G., West, E., Wickler, S., Yuan, J., Cooper, A., and Dobney, K. Phylogeny and ancient DNA of Sus provides insights into neolithic expansion in Island Southeast Asia and Oceania. Proceedings National Academy of Sciences 104(12) 4834-9 (2007)
  • Ho SYW, Shapiro S, Phillips MJ, Cooper A, Drummond AJ. Evidence for time dependency of molecular rate estimates Systematic Biology 56:515-522 (2007).
  • Behar, D.M., Rosset, S., Blue-Smith, J., Balanovsky, O., Tzur, S., Comas, D., Mithcell., Quintana-Murci, L, Tyler-Smith, C., Wells, R.S., The Genographic Consortium. The Genographic Project Public Participation Mitochondrial DNA Database, PloS Genetics 3(6) (2007).
  • Melville J, Goebel S, Starr C, Keogh JS & Austin JJ (2007) Conservation genetics and species status of an endangered Australian dragon, Tympanocryptis pinguicolla (Reptilia: Agamidae). Conservation Genetics 8:185-198)
  • Doughty P, Maryan B, Austin JJ & Melville J (2007) Independent evolution of salt lake specialization in the genus Ctenophorus (Lacertilia: Agamidae), with a description of a new species from Lake Disappointment, Western Australia. Herpetology 63:72-86
  •  Nicholls, J.A., Austin, JJ., Pavlacky, DC., Green, DJ.  Characterization of polymorphic microsatellites in the logrunner, Orthonyx temminckii (Aves: Orthonychidae)Molecular Ecology Notes 7 (6):1117-1119 (2007)
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2006

  • Endicott P, Metspalu M, Stringer C, Macaulay V, Cooper A, Sanchez J. Multiplexed SNP typing of ancient DNA clarifies the origin of Andaman mtDNA haplogroups amongst South Asian tribal populations. PLoS One 1, e81 (2006).
  • Cooper A, Year of the mammoth. PLoS Biology 4, e78 (2006).
  • Barnett R, Yamaguchi N, Barnes I, Cooper A. The origin, current diversity and future conservation of the modern lion (Panthera leo). Proceedings of Royal Society, Biology 273, 2159-2168. (2006).
  • Barnett R, Yamaguchi N, Barnes I, Cooper A. Lost populations and preserving genetic diversity in the lion Panthera leo; Implications for its ex situ conservation. Conservation Genetics 7, 507-514 (2006).
  • Nicholls JA, Austin JJ, Moritz C & Goldizen AW (2006) Genetic population structure and call variation in a passerine bird, the satin bowerbird, Ptilonorhynchus violaceus. Evolution 60: 1279-1290.
  • Austin, JJ & Arnold, EN (2006) Using ancient and recent DNA to explore relationships of extinct and endangered Leiolopisma skinks (Reptilia: Scincidae) in the Mascarene islands. Molecular Phylogenetics and Evolution 39: 503-511.
  • Austin, JJ & Melville, J (2006) Incorporating historical museum specimens into molecular systematic and conservation genetics research. Molecular Ecology Notes 6: 1089-1092.
  • Austin, JJ, Rose, RJ & Melville, J (2006) Polymorphic microsatellite markers in the painted dragon lizard, Ctenophorus pictus. Molecular Ecology Notes 6:194-196
  • Wragg, G. M., Worthy, T. H. (2006). A new species of extinct imperial pigeon (Ducula: Columbidae) from Henderson Island, Pitcairn Group. Historical Biology 18(2): 127-140.
  • Holdaway, R. N., Worthy, T. H., (2006). Evolution of New Zealand and its vertebrates. Chapter 6 In Merrick, J. Archer, M., Hickey, G. M., and Lee, M. S. Y. (eds). Evolution and Biogeography of Australasian Vertebrates, Auscipub Pty Ltd: Sydney, Pp 111-128.
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2005

  • Gilbert MTP, Shapiro B, Drummond A, Cooper A. Post-mortem DNA damage hotspots in Bison (Bison bison) provide evidence for both damage and mutational hotspots in human mitochondria DNA. Journal of Archaeologyical Science 32:1053-1060 (2005).
  • Ho SYW, Phillips MJ, Drummond AJ, Cooper A. Accuracy of rate estimation using relaxed clock models with a critical focus on the early metazoan radiation. Society for Molecular Biology and Evolution 22, 1355-1363 (2005).
  • Barnett R, Phillips MJ, Martin LD, Harington CR, Leonard JA, Cooper A., Evolution of the extinct sabre-tooths and the American cheetahlike cat. Current Biology 15: R1-R2 (2005).
  • Ho SYW, Phillips MJ, Cooper A, Drummond AJ., (2005) Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Society for Molecular Biology and Evolution 22, 1561-1568.
  • Weinstock J, Willerslev E, Sher A, Tong W, Ho SYW, Rubenstein R, Storer J, Martin L, Bravi C,Prieto A, Froese D, Scott E, Xulong L, Cooper A. Evolution, systematics, and phylogeography of Pleistocene horses in the new world: A molecular perspective. PLoS Biol 3(8): e241 (2005).
  • Larson G, Dobney K, Albarella U, Fang M, Matisoo-Smith L, Robins J, Lowden S, Finlayson H, Brand T, Willerslev E, Rowley-Conwy P, Andersson L, Cooper A. Worldwide phylogeography of wild boar reveals multiple centres of pig domestication. Science 307, 1618-1621 (2005).
  • Bunce M, Szulkin M, Lerner HRL, Barnes I, Shapiro B, Cooper A, Holdaway RN. Ancient DNA provides new insights into the evolutionary history of New Zealand's extinct giant eagle. PLoS Biology, 3:1-4 (2005).
  • Willerslev E, Cooper A. Ancient DNA. Review Paper. Proc Roy Soc Lon B. 272:3-16 (2005).
  • Nicholls, JA & Austin, JJ (2005) Phylogeography of an east Australian wet forest bird, the satin bowerbird (Ptilonorhynchus violaceus), derived from mtDNA and morphology. Molecular Ecology 14, 1485-1496.
  • Rheindt, FE & Austin, JJ (2005) Major analytical and conceptual short-comings in a recent taxonomic revision of the Procellariiformes - a reply to Penhallurick and Wink (2004). Emu 105, 181-186.
  • Beadell, JS, Gering, E, Austin, JJ, Dumbacher, JP, Pierce, MA, Pratt, TK, Atkinson, CT & Fleischer, RC (2005) Host-specificity and prevalence of avian malaria parasites in the Austral-Papuan region. Molecular Ecology 13, 3829-3844.
  • Bardeleben, C, Semple-Delaney, K, Austin, JJ & Moore, RL (2005) Isolation of polymorphic tetra-nucleotide microsatellite markers for the grey-headed robin Poecilodryas albispecularis. Molecular Ecology Notes 5, 146-148.
  • Bardeleben, C, Gray, MM, Austin, JJ & Amorim do Rosario, I (2005) Isolation of polymorphic tetra-nucleotide microsatellite markers for the large-billed scrubwren Sericornis magnirostris. Molecular Ecology Notes 5, 143-145.
  • Bardeleben, C, Moore, RL, Austin, JJ & Robson, T (2005) Isolation of polymorphic tetra-nucleotide microsatellite markers for the Satin Bowerbird Ptilonorhynchus violaceus. Molecular Ecology Notes 5, 305-307.
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Australian Centre for Ancient DNA
School of Biological Sciences
Darling Building
North Terrace Campus

The University of Adelaide
South Australia 5005
Australia

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