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Early Career Researcher Programs (ECRs) Round 3 reports
[back to Round 1 or Round
2 or Round 4 or
Round 5 reports]
1 Project title: Genetic Diversity
in a Fragmented Habitat: Laticaudid Sea-kraits as a Model System
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CI(s)/Institution: Amanda Lane, University of Sydney
($1,300)
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2. Project title: Research visit to Sean Connolly &
Andrew Baird at James Cook Uni
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CI(s)/Institution: Ariella Helfgott, University of
Adelaide ($1,500)
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3. Project title: Training course:
Analysis of Environmental Data (Adelaide Jan 2007)
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CI(s)/Institution: Angus MacGregor, PhD Candidate,
University of Adelaide, School of Geographical & Environmental Studies
($1,500)
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Aims/background:
Analysis of Environmental Data was an intensive 2-week course run
at the University of Adelaide from January 29 - February 10 2007 by
Dr Steve Juggins, a leading environmental and palaeoecological statistician
from the University of Newcastle (UK).
The course provided participants with training in the theory and application
of statistical techniques useful for the analysis of environmental data
with a particular focus on the development of palaeoecological transfer
functions.
Project:
Addressing the specific need for specialist theoretical and analytical
statistical training within the broader Australian palaeoecological
research community, 76% of participants were Early Career Researchers.
Such a high proportion of ECR's in attendance demonstrates that the
course has served as a training platform for the next generation of
Australian palaeoecologists. The course was attended by 25 participants,
affiliated as follows:
The University of Adelaide 11
Australian National University 4
Southern Cross University 2
University of Tasmania 2
CALM WA 2
Geosciences Australia 1
MDBC 1
University of Maine USA 1
GNS New Zealand 1
Outcomes:
Participation in this course exposed Angus to a range
of theoretical approaches and statistical applications not yet widely
used in Australia. It has ensured Angus that his own inference model
(or transfer function, in progress) is robust and of the highest international
calibre. It is envisaged that 2-3 international papers (in preparation)
will directly flow from the data analyses produced from the techniques
learned at this workshop.
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4. Project title: Research visit to Prof Jean Clobert's
laboratory(France):tutoring in theory and application of mathematical
models to explore phenotypic plasticity in animal populat
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CI(s)/Institution: Christine Lambkin, QLD Museum; Nick
Murphy & Michelle Guzik, University of Adelaide (19,600)
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5. Project title: Ancient DNA records of the environmental
impact of climate change and humans on Australian megafauna
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CI(s)/Institution: Nic Rawlence, PhD Candidate, University
of Adelaide, School of Earth & Environmental Sciences ($3,500)
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6. Project title: Development and application of novel
genetic markers to address issues of marine turtle conservation
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CI(s)/Institution: Michael Jensen, PhD Candidate, University
of Canberra, Institute of Applied Ecology ($3,500)
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7. Project title: Travel funding
to attend workshop on Orchid Population Dynamics
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CI(s)/Institution: Renate Faast, University of Adelaide
($3,500)
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Attend a 2 day workshop March 17-18, 2007 in conjunction with the
3rd International Orchid Conservation Congress (IOCC): Population
dynamics applied to Orchid Conservation, University of Costa Rica,
San Jose run by Professors Raymond Tremblay, University of Puerto
Rico and Pavel Kindlmann, University of South Bohemia in c. The workshop
involved approximately twenty early career researchers from Europe,
North America, South America and Australia providing an excellent
opportunity to work with other researchers and two internationally
renowned experts in the field of orchid biology and conservation.
Participants included early career researchers as well as academics
from all around the world, including UK; Puerto Rico; Australia; Canada
and Argentina.
Training in the collection and analysis of demographic data using
life cycle diagrams and matrix population models. Use of such models
allows calculations of population growth rates as well as predictions
of stable stage distribution, reproductive value (contribution of
life stages to the next generation) and sensitivities (impact of each
life stage on population growth rate) and as such provide an important
tool for making conservation and management decisions. Calculations
of confidence intervals, taking into consideration demographic, spatial
and temporal variation were also discussed. Theory was reinforced
and consolidated by providing an opportunity for every participant
to analyse data sets from real orchid populations using software Poptools,
RAMAS and Excel. Aspects of population dynamics at the landscape level
were discussed including metapopulations and island biogeography theory
highlighting the importance of migration, fragment size and isolation.
Of the 300 species of orchids recorded in South Australia,
over one-third are threatened and Renate's PhD project is investigating
various factors that may be responsible for the ongoing decline of some
of South Australia's Caladenia orchid species. A major component of
this research focuses on changes in successional habitat characteristics
that may impact not only orchid survival and population growth rate
but also their ability to colonise new habitats, essential for ensuring
the long-term survival of species at the regional scale.Attending the
Population Dynamics workshop has provided Renate with techniques for
analysing population dynamics that are directly applicable to the data
she is collecting for her PhD project. Furthermore, the techniques learned
will be passed on to other researchers and managers involved in the
Lofty Block Threatened Orchid Recovery Project (Department for Environment
and Heritage, SA) and can be incorporated into current management processes.
In addition to the workshop, scientific presentations at the International
Orchid Conservation Congress (IOCC) included those directly relevant
to Renate's research project as well as providing an excellent overview
of global orchid research and conservation challenges. Equally as valuable
was the opportunity to network with experts in the field.
Perhaps one of the most important outcomes of the IOCC arose from the
Australian Region Orchid Specialist Group, where it was suggested that
a national workshop be organised to review historic and current research
and management involving orchids within the genus Caladenia R. Br. Dr.
Lachlan Farrington (an ECR post-doctoral fellow also involved with the
project) and Renate have been asked to form the South Australian component
of the committee to organise such a workshop in Adelaide. This workshop
will bring together national and international experts to provide an
overview of Caladenia research with the aim of consolidating this work
and identifying knowledge gaps that need to be addressed by future studies.
Furthermore, it will provide an invaluable forum for integrating scientific
research with on-ground conservation and management practices.
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8. Project title: Assessing the social and genetic
architecture in Egernia whi
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CI(s)/Institution: Geoff While, PhD Candidate, University
of Tasmania, School of Zoology($3,500)
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9. Project title: Research visit to Prof Jean Clobert,
France
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CI(s)/Institution: Fabien Aubret, University of Sydney
($2,500)
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10. Project title: Travel funding
to attend International workshop
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CI(s)/Institution: Lachlan Farrington, Postdoctorial
Fellow UoA ($3,50
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Population dynamics applied to Orchid Conservation, University of
Costa Rica, San Jose run by Professors Raymond Tremblay, University
of Puerto Rico and Pavel Kindlmann, University of South Bohemia. The
workshop involved approximately twenty early career researchers from
Europe, North America, South America and Australia providing an excellent
opportunity to work with other researchers and two internationally
renowned experts in the field of orchid biology and conservation.
To investigate statistical techniques for determining the probability
of persistence or extinction of populations and species. The workshop
involved a theoretical overview of current statistical techniques
for investigating population dynamics in orchids. This involved identifying
key life-history stages, the links between the stages and the transcription
of this into experimental design and statistical analysis toward a
conservationally meaningful outcome. Through the use of real data
sets, workshop attendants were required to map out a life history
diagram and then utilise various models and analysis programs (Poptools,
RAMAS) to investigate and project long term patterns of population
growth and viability in orchid populations. It was also demonstrated
how the most critical life histories stages could be identified by
adjusting model parameters and observing the projected effects on
future viability. The workshop highlighted some of the areas of orchid
research which require much more attention in order to better validate
assumptions behind population dynamic research and highlighted the
need for long-term data sets.
Lachlan's current research is an investigation of the
population genetics of several orchid species across a fragmented landscape
in the Mount Lofty Ranges of South Australia with respect to different
life-history strategies. Of the 300 species of orchids currently recognized
in South Australian, approximately one third are either endangered or
extinct and this is generally attributed to habitat fragmentation and
associated decline. For example, some species are highly specific with
respect to pollinating agents, utilizing a single species of insect
for the transfer of pollen (pollinia) from one plant to another. Other
species are more general and can utilize several different species for
pollination.
Lachlan's project investigates the population genetics of species with
different pollination syndromes and with varying levels of distribution
to determine whether some life-history types are more vulnerable to
anthropogenic disturbances. The ultimate interpretation of this research
will rely heavily on recognition and assimilation of ecological theory
associated with the population dynamics of orchids and the interplay
between this and patterns of genetic structure and diversity. The attendance
of this workshop allowed Lachlan to gain an up to date and comprehensive
overview of ecological based orchid research and provided the opportunity
to interact with other orchid ecologists and geneticists.
This workshop promoted a more rigorous understanding
of how orchid populations persist and the mechanisms driving evolution.
In addition, the techniques demonstrated can also be applied to other
organisms and will prove useful in future avenues of research and also
increase Lachlan's supervisory potential.
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