Biological Indicators of Climate Change and Historical Phylogeography
Andrew Lowe | Fran MacGillivray | Jolene Scoble
While climate change has been a persistent theme shaping the global biota for many millions of years, anthropogenic forcing has greatly increased the rate of recent climate change. Our research focuses on understanding how species have responded to historical climate change in order to inform biodiversity conservation planning under contemporary climate change predictions. Phylogeographic techniques, which seek to interpret patterns of intraspecific genetic diversity in a geographical framework, are being used by our group to identify areas that enable species to persist (refugia) and evolve (by facilitating adaptive diversification and admixture) under both historic and contemporary climate change. In addition historical records of phenological and species distribution are being explored to track shifts in biological indicators with major climatic changes. Strong links with government agencies (SA DEH, State Herbarium of South Australia, Nature Links, CSIRO) will ensure our research informs conservation plans seeking to ‘climate-proof' natural ecosystems.
Current Research Projects
Shifts in phenology provide a reliable signal for the early detection of change in biological systems. However, the long-term data sets required to determine the nature and magnitude of climatic impacts are very limited in Australia. Current research incorporates an interrogation of archival records to redress this important issue. Herbarium collections, with their broad temporal, geographic and phylogenetic representation, provide a unique and readily accessible source of data, independent of season. However, such records are often variable, discontinuous, and incomplete, and research so far has generally been restricted to dates of full flowering of species represented in arboretum plantations. The impact of rising temperatures is highly significant in the northern hemisphere, but the non-uniform periods of warming which have occurred throughout the 20th century pose a particular challenge when linear regression analysis is used for the reconstruction of trends. In Australia, other climatic factors such as rainfall and periods of drought take on greater relative importance, and natural variation across sites, including local microclimatic conditions, genetic differences and other non-climatic factors contribute to the uncertainty. This project is investigating possible non-linearities between herbarium records and climate. MacGillivray F, Hudson I, Lowe AJ (2009) Herbarium collections and photographic images: Alternative data sources for phenological research. In: Phenological Research: Methods for environmental and climate change analysis (Eds. Keatley MR, Hudson I). Chapter 19. pp 425-461. Springer.
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![]() | Understanding demography of the southern scrub-robin to inform conservation planning under climate change - Jolene Scoble |
The presence of refugia was important to the adaptation, diversification and persistence of native biota during the evolution of Australia's inland arid ecosystems. During times of climatic extremes, these refugia constituted places where populations could contract, and then expand from when conditions once again became favourable. It is however, unlikely that historic refugia alone will be sufficient to protect species from future climate change. Land uses have changed the quality of and access to local refugia as evidenced by local extinctions of birds in Australia's rangeland bioregions, and may further limit the availability of refugia in the future. Understanding how contemporary land uses leads to habitat fragmentation and its impact on metapopulation structure, will be critical to assessing a species' ability to navigate unsuitable habitat to locate their habitat envelope and seek out refugia as climatic conditions shift. Ground-dwelling birds, such as the southern scrub-robin (Drymodes brunneopygia), appear particularly vulnerable to agricultural changes in their habitat because they feed, nest and seek camouflage on the ground. With a view to inform future management of priority refugia, we are seeking to undertake a genetic analysis of the southern scrub-robin in mallee habitat of eastern South Australia. We will assess the impact of agricultural practices on the quality of, and access to climatic refugia by investigating population demography across an ecotone between high vegetation remnancy north of the Murray River (where grazing dominates), and relictual habitat south of the river due to broad acre cropping. Our objectives are
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Funding:
Williams, S, Hughes L, Stafford–Smith M, Possingham H, Hoffman A, Brook B, Lowe A, Pressey B, Williams D, Garnett S, Kitching R, Thomas C, Moritz Craig (June 2008) Terrestrial Biodiversity - Adaptation Research Network - National Climate Change Adaptation Research Facility ($1.6 M)
Kremer A; Lowe AJ, and 12 others (2000-2004) Intra and interspecific gene flow in oaks as mechanisms promoting genetic diversity and adaptive potential, OAKFLOW. EU-FP5 contract (€2.5 M; £200,000 to my group).
Relevant publications:
MacGillivray F, Hudson I, Lowe AJ Herbarium collections and photographic images: Alternative data sources for phenological research. In: Phenological Research: Methods for environmental and climate change analysis (Eds. Keatley MR, Hudson I). Chapter 19. Springer.
Lowe A, et al (2006) The route, speed and mode of oak postglacial colonisation across the British Isles; Integrating molecular ecology, palaeoecology and modelling approaches. Botanical Journal of Scotland 57: 59-82.
Davies S, White A, Lowe A (2004) An investigation into effects of long-distance seed dispersal on organelle population genetic structure and colonization rate: a model analysis. Heredity. 93: 566-576.
Muir C, Lowe AJ, Fleming CC, Vogl C (2004) High nuclear genetic diversity, high levels of outcrossing and low differentiation among remnant populations of Quercus petraea at the margin of its range in Ireland. Annals of Botany. 93:691-697.
Cottrell J; Lowe AJ and 4 others (2002) Distribution of Chloroplast DNA variation in British Oaks (Quercus robur and Q. petraea): the influence of postglacial colonisation and human management. Forest Ecology and Management (Special Issue) 156: 181-196.
Jensen JS; Lowe A and 5 others (2002) Chloroplast DNA variation within the Nordic countries. Forest Ecology and Management (Special Issue) 156: 167-180.
Petit RJ; Lowe AJ, and 27 others (2002) Chloroplast DNA variation in European white oaks: Phylogeography and patterns of diversity based on data from over 2,600 populations. Forest Ecology and Management (Special Issue) 156: 5-26.
Petit RJ; Lowe AJ, and 19 others (2002) Identification of refugia and post-glacial colonisation routes of European white oaks based on chloroplast DNA and fossil pollen evidence. Forest Ecology and Management (Special Issue) 156: 49-74.




