Introduction to Bash: Using the Terminal for Bioinformatics
- Date: Tue, 1 Jan - Tue, 31 Dec 2019
- Location: TBC
- Contact: Bioinformatics Hub +61 8 8313 1207
- Email: firstname.lastname@example.org
This course is targeted at all researchers in biological and medical research wishing to develop their bioinformatics capacity, and is now offered over 4 x 2hr sessions across multiple days/weeks.
- Postgraduate students can receive credit for 8 CaRST hours upon completion of the course.
- Undergraduate Students and other researchers are also welcome.
This workshop is designed to give you the prerequisite skills for accessing High Performance Computing (HPC) machines, like Phoenix. Basic data management strategies will also be covered in the context of next generation sequencing data.
The specific areas which will be covered are:
- Navigating through files and directories
- Basic bash tools and commands
- Regular Expressions
- stdout, stderror and re-direction of output
- The stream editor sed
- Writing bash scripts
- Basic job submission to a High Performance Computing (HPC) system
Prerequisites and co-requisite courses
- No prior experience is required
- All attendees are required to provide their own laptop. No specific OS is required.
- This course serves as a prerequisite for Introduction to Next Generation Sequencing (NGS) Data
No dates have been scheduled for 2019.
Please contact the Bioinformatics Hub to express your interest in attending the next event.