[comments in square brackets are ignored by PAUP, Mesquite, MacClade, raxML etc]

#NEXUS 


Begin data;

[this tells PAUP how many taxa and characters to expect in the file] 
DIMENSIONS ntax=28 nchar=8334;

[This tells it to recognise DNA states e.g. ATGC as well as numerical states up to 7;
the dot symbol . is defined as meaning state is the same as the FIRST taxon;
the INTERLEAVE command means each different types characters can be presented as separate matrices
one after the other]

FORMAT datatype=DNA symbols="0 1 2 3 4 5 6 7" interleave=yes gap=- missing=? MATCHCHAR=. ;


MATRIX

[Data is interleaved in this order: Morph - mtDNA - Cmos - RAG1 - RAG2 -R35 -HOX -JUN -Enolase -Amelogenin -MAFB]

[Morphology, characters 1-248 - From Lee 2005, Biology Letters]
Sphenodontida     		000(01)000000000000000000000000000000000(01)0(01)(01)(01)0000(01)0000000(04)0000000000?0000000000000000000000000000000000000(01)0000000000000(02)000(01)(01)0(02)??000?000000000000(01)00000(01)00000000000?0000000????000(01)00000000000?0(01)000000000000(01)000000000000000000000000000000000??000?00(02)00
Dibamidae         		100000000010001?0?00010001000{01}(12)?101?2111?00(01)1??1000???302(01)000110110?00012001111001202101101012011001100001?1101?00(01)0002?00002??010?(01)000?1?0100000001011000001000110(12)11?1?10101111?1(45)10(01)12000?101000001110?1???1??1??00?312?0?1(01)0???1?????0000??01??110?0
Gekkoninae        		1001000000100000010001000(01)010100101?2111?2001??1000???30010001100?000011010000(01)001101011001010(01)0(01)0000000010101100000022?0010(12)00001011000(01)10100020101011000000000100001?1?10?10001?0(02)00000000?0010000100000011(01)01100100?10000000(01)(01)100001000000??00(01)100011
Pygopodinae       		000(01)00000010000001000(01)0000(01)(01)010?101?2011?2001??1000???30010001100?00001101000000010010110010100010000010010(01)01101000022?00(01)01000010110001?010002011101(01)000000000100001?1?10110101?(01)410000000?00100000100001?100101??00?302?0?1(01)1???1?????0000??0001000?1
Xantusiidae       		1001000000?00000010001000(01)0(01)010?101?0(01)0(01)0211000110110010010001(01)0100000110100000000(01)0101100101(01)1010000000010(01)(01)1100000012?00101100000110(01)?1?0110000000000000000000100001?1?00101101?(01)(23)00000(01)0(01)1000000010000000100110010(01)01000000111100001000000??(01)01000010
Cordylidae        		100(01)00000000000(01)010000000(01)010(01)001(01)0101(01)(01)02(01)000011011001001000100100000110000000100(01)0101000101000100000000100011(01)00000100001000000101101001010002001(01)111000000000100001?(01)0001011(01)1?1(23)(01)0000000?000000010000000100(01)(01)00100?(12)(01)000001021000010001120020200(01)010
Scincidae         		(01)001000000(01)0000(01)01000(01)000101010(01)1(01)(01)101(01)0020000010111001001000100(01)000001100000(01)0100(01)0(01)(01)1000101(01)(01)0100100000100011(01)000001(012)00010(01)0000101(01)010010100(01)2001111100000(01)000100001?(01)000101101?130000(12)00(01)00(01)000001000000(01)10011(01)010(01)?1(01)00000(01)1210000100011200(02)0(12)0(01)(01)010
Teiidae           		100(01)001000(01)0000101000(01)0000010(01)0(01)1001010(01)0(012)0000(01)1(01)0110(01)1000000(01)(01)0100000110(01)0000000000(12)01000101(01)0010000000010(01)001(01)000002(012)00(01)(01)0(01)(01)000101100001012012000000(01)00000(01)00010(01)(01)01?(01)00(01)10110011(023)00000(12)01100000001000000(01)1101100101010010001(01)2100001000000??(02)0(12)0(01)(01)010
Lacertidae         		100100100000000(01)0(01)0001000101000?111?01000210000101110010000001000?0000110000000000101010001010001000000001000(01)100000020(01)001000000101100001011012000000000000000010(01)001?(01)00010110001(023)0000(01)(01)0(01)1000000010000000100110010101(01)000000021000010000010020(12)000010
Rhineuridae       		10010000(01)(01)1000(01)101000100010(01)002?001?(02)11100(01)(01)1??1000???3(01)210001111122121120011100(01)1202(01)011010110110001000010122(01)(01)?(01)(01)000(012)10(12)10(12)100(01)00(01)00(01)0(01)00?000(012)(01)011011(01)0000100(01)11(01)221?1?00101111?1(45)10(01)12000?1(01)1?10001110?(012)000(01)1?1??(01)0?30(12)100111???2?????0000??(02)(01)2?1(01)010
Bipedidae         		10010000(01)(01)1000(01)101000100010(01)002?001?(02)11100(01)(01)1??1000???3(01)210001111122121120011100(01)1202(01)011010110110001000010122(01)(01)?(01)(01)000(012)10(12)10(12)100(01)00(01)00(01)0(01)00?000(012)(01)011011(01)0000100(01)11(01)221?1?00101111?1(45)10(01)12000?1(01)1?10001110?(012)000(01)1?1??(01)0?30(12)100111???2?????0000??(02)(01)2?1(01)010
Amphisbaenidae    		10010000(01)(01)1000(01)101000100010(01)002?001?(02)11100(01)(01)1??1000???3(01)210001111122121120011100(01)1202(01)011010110110001000010122(01)(01)?(01)(01)000(012)10(12)10(12)100(01)00(01)00(01)0(01)00?000(012)(01)011011(01)0000100(01)11(01)221?1?00101111?1(45)10(01)12000?1(01)1?10001110?(012)000(01)1?1??(01)0?30(12)100111???2?????0000??(02)(01)2?1(01)010
Trogonophidae     		10010000(01)(01)1000(01)101000100010(01)002?001?(02)11100(01)(01)1??1000???3(01)210001111122121120011100(01)1202(01)011010110110001000010122(01)(01)?(01)(01)000(012)10(12)10(12)100(01)00(01)00(01)0(01)00?000(012)(01)011011(01)0000100(01)11(01)221?1?00101111?1(45)10(01)12000?1(01)1?10001110?(012)000(01)1?1??(01)0?30(12)100111???2?????0000??(02)(01)2?1(01)010
Helodermatidae    		100100000000000101000000011?010?001?0111?2001??100110110000001100?000011100100010010001000101100110000100101011000000200121011100101110000010002001100101110110010111(01)00000101101?130000(12)000?01?0010100000000001001?00?100000001110000100010210102001010
Anguidae          		100100000000000101(01)00(01)000(01)(01)1010(01)110101100(12)000001(01)0(01)10010(01)1000100(01)1000011(01)0010(01)0(01)001000100010110010000000010(01)011000000(12)001110(01)000010110(01)001010002001101100(01)0010001000010(01)000101101?1(34)(01)0(01)0200(01)00(01)00000(01)00000(01)(01)10011(01)0100?(12)0(012)000(01)1(01)210(01)00100011200(01)0(12)0(01)1010
Varanidae         		101000010101000101001?2001010101110111100100000100110110110001100?0000110011000101011010001011001100001000010111000002001210011000011200000000020011001011101100101111?1?02201101?1320102000?01?101010000000110(01)000(01)0(01)?200000000(01)100001000(01)0(02)11(01)00011010
Serpentes        		101(01)10000(01)10001???00(01)01001(01)(01)00(02)(01)(01)0(01)0(12)111?0011???00101(01)(23)(12)210(01)0120111121112011(01)(01)0011002110111112001(01)1001(01)011?0011(01)101112011?22(012)21(01)001003(01)?(01)0000(01)00(012)01100122(01)101(01)110?1(012)(012)(01)1(01)10(01)(01)(01)1110116?0(01)(01)2000?01??11000110?2???1??1??1???02???(12)21???(12)?????0000??01??112?0
Leiocephalus      		100000(01)00000000101000001000110(12)0000001(01)01(12)000010001100100(01)0000000?000000000000000000(01)0100(01)0000000000000000000(01)1000(01)002(012)(01)0(12)10(012)(01)000(01)0110000(01)(01)10002000(01)00000000000010000(01)0(01)00010110(01)11(01)0000(01)00(01)10(01)(01)(01)0001000000(01)1(01)00(01)0000(01)0(012)(01)00000000100000000000??(01)0(12)0(01)0000
Iguaninae        		100000(01)00000000101000001000110(12)0000001(01)01(12)000010001100100(01)0000000?000000000000000000(01)0100(01)0000000000000000000(01)1000(01)002(012)(01)0(12)10(012)(01)000(01)0110000(01)(01)10002000(01)00000000000010000(01)0(01)00010110(01)11(01)0000(01)00(01)10(01)(01)(01)0001000000(01)1(01)00(01)0000(01)0(012)(01)00000000100000000000??(01)0(12)0(01)0000
Polyglyphanodon        	10010000?0000001000001020101?100100001?0110000100012001001000?000?00000?00??000?00?000100????0001000000?010110110??002????00110000011??0000?100(12)0000000100002??0100001?1??0101100113(01)0000000?00000001000000010011001?????00000000100001(01)00000??0?????0?0
Macrocephalosaurus  	10010000110000010100000(01)01010000000001?0(01)20000(01)000120010010001000?00000100000??000001010001010001000000?01012001110002???000110000010000000110010001000000000000100001?1??010110011??0000?00?00000001000000?11011001?????00000001100001000000??2?????0??
Sineoamphisbaena       	?0??00001000?00100000001011?010100000011?2000011100???11?100011110(02)?1???000?11??01?0(12)00100101?0?100010000101210??1?0?2????00???0?1????000?0???0(12)00?????100002??0110111?1??0101101?1?00??000????????0100???0?1????0???????0000????????????0000??2?????00?
Aigialosauridae       	11??0?01010??1011101??2010(01)10(01)0?1??101?001?000010011?1?20?111??????00???????????11??????0?????????????????0????????10201??0102?110?0020100010101002101?21111?1?1???00?????0101100113211?0000?01?101000001100000?000?00?0001110(02)1100011?110000??0?????1??
Mosasauridae          	111000010100010111010?2010000(01)011(01)01011001?0000000111122011111001100001100110001110020100111100011000010010(01)0010100102011?0102?1101002010001010100210112111111110?1001?01?0(01)1110011321110000?01?101000001100(01)00?001?00?000111021(01)00011?110000??0010??2?0
Dolichosauridae        	????0?0101?????????0???0?00101???0??????0?????????????????????0??????????????????????????1??????????????????????????02111?0??2??01000???000?0??????????200?0111????00?????010110011(345)301?2000?01??010?000??1?00???1??0????1???1?????111???0000??0????????
Adriosaurus            	1???1?010(01)0??0?????????00101?(01)0?10?0?1?0010?0???0010?1??????????11??????????????????2????????????????????????1????0????????????????????0??????0?001101????10???1??1(01)??????01???00?1330????10?01?1011?000111??????????????111112110111??110000??0????????
Pachyrhachis           	10??1000001?0001010???20011??00110000111?0011???0010?123210?0??0111121?1?????00?1???21??11???2?0??1001001100011?10?11201??2202??0010030?000101001??????22110?1?1???000101?00??100?1530102010?01????1?0011?2???1??1??1???02?0?12110111??111000??01????2?0
Haasiophis             	10??10?0001??0?????00??00100?0???0???1?1?0011???0010112021000?2?111??111???????0????21??1?????001?10010?1??0011?10?11201??2202?10000030?000?01001??????2?110???1???000101??????0???63?1???1????????0???21?2???1??1??1????2?0?12????11??1110?0??01????2??



[MtDNA - 249-2142 = 1894 bp; Townsend alignment using Dinodon not Cylindrophis for snake to minimise missing data, and adding Rhineura]
Sphenodontida         AAACTACTCCCATCACACCGTACATTATGCCTTTGACACACATCCATGCCTATTACCTTATCAGGGGTTCCCCCAGCAATT---------T----------------------GGACATGTGCCTGAATA-----AAGGATCACTTTGATAGAGTGAACTAAAAAGGTTTAAACCCTTTCATCTCC----------TAGAAAAATGGGAATCGAACCCAAACAT--TAGAGACCAAAACTCCATGTACCCCATC---ATACTGTTTTCTAA-------------AGTAAAGTCAGCTAATAA---AGCTTCTGGGCCCATGCCCCAAAAATGTTGGTTAAAC----CCTTCCTTTACTA----ATGCACCCCTCCATCACCTCTTTGCTCCTTATCGCCCTATCCACAAGCACTATTATTACAATATCAAGCTACCATTGAATATTCGCTTGAGCTGGATTGGAAATTAATATACTCTCTATACTACCCCTAATCTCAAAAGAACACCACCCCCGAGCCGTAGAAGCCACCATAAAATATTTCATGACACAAGCCGCCGCCTCAGCCATATTAATCTTCGCAAGCACCATTAATGCTTGACAAACTGCCCAATGAGACATTTCATTACTCACACCCTCAACACCAATAATAATATTAACACTAGCTATTACCATAAAACTAGGCTTGGCCCCATTCCACTTCTGATTACCAGAAGTATCATTAGGAACAACCAACTCAGTTATATTAATTATCACAACATGACAAAAACTGGCCCCACTAGCCATCATTATTCTATTACATAACTCATTAAATCATCACTTATTGACCAGCCTCGGTCTTTTATCTATGGTAGTTGGGGGGTGAGGAGGAATGAACCAATTACAAATTCGAAAAATTATAGCATACTCCTCAATCGCCCATATAGGATGAGTAGTTATAATTTTACCAAAAGCCCCAGACCTATCCCTACTGTACCTTATACTATATATTATGTTAAACCTCACAATATTCTTAATTATTATTTCCACCGCCCTAACCAAGCTGACAAGCCTTTTTTCAACACAAAACAAATCATTCCCCATAATAATCTTGATAGCCCTAACCCTGCTTTCAATAGGAGGCCTACCACCCATAACAGGATTTTTACCAAAATGATTAATTCTACAAGAACTAATCTACCAACACCAAACACAAATGGCCACTCTAGCATCCTTATCCACC---TTGCTCAGCCTCTTCTTTTATCTCCGCCTAGTATTCAACGCATTTCTAACCACTCCACCAAACACCTCAAATGTGACAAAAAACTGACGAAACCAAACCAACCACCACATTTTACTCCCACAACTAATAATCTTGTCCTTAATATTACTTATTATTACCCCACTAGTTATTAGCCTATTT---------TA----AGAAATTTAGGATATATA-------AACCAGGGGCCTTCAAAGCCCCAAAA-AAGAGACAT----CTCTTAATTTCTGA---------GGAAACCTGAAAGATTCTTA-CTTTCATAGCCTTAATGCAACTAAGACACTTTTATT-AAGATAAGGCTTC--------CTAAATGAGCAGGCCTCGATCCTACAAACT--CTTAGTTAACAGCTAAAC-ACCTTAAACAAC-AGGCTTCCATCTAC-----------------------------------TAAGCCTGGACTATATTTC-----TAATCTTTC--CTAAGTTTGCAGCTCAGTACTTAA---------CAGGCCT-------------GATAAGAAAAGGAATTAAA-CCTTTATAA-ATAGGTCTACAGCCTAACACCTGACACT--CGGCCATCTTACCTTTGCCA---TACAAACGCTGACTCTACTCAACC   [1697]
Dibamidae             AACTTCCTACCTATTACGCTAGCCATATGCATGTGACACGCCTCATTCCCAATCACCATATCAGGACTTCCCCCCAACAAC---------TAA--------------------GGAAGCATGCCCGAGCATTAA-AAGGATTACTTTGATAGAGTACACAACAGGGGTTAAAATCCCCTTACTTCCC---------TAGGAAGACAGGACCCGAACCTGCACCC--AAGAGCCCAAAACTCTTCGTACTACCACTT-ATACTACCTCCTA---------------GTAAAGTCAGCTAATAA---AGCTTTTGGGCCCATACCCCAAAAATGTCGGTTAAACC---CCTTCCTTTACTA----ATGAATCCCACTGCCCTTTCACTAATTTTATCAGGCTTAGGAGCAGGCTCAATCATTACAATAACCAGCTACCACTGACTTGTCGCTTGAATCGGCCTAGAACTTAATACCCTAGCCATTATTCCTGTTATTGCCAAACATCACCACCCACGATCCACAGAAGCCGCAACCAAATACTTTCTCACACAGGCCGCCGCATCCGCCCTAATCTTATTCTCGAGCACCATAAACGCCTGACACTCAGGACAGTGAGACATCACACAACTAACCTATCAACCAGCCTGCATCACCATCACCATGGCCCTAGCCATAAAACTAGGATTAGCACCCCTACATTTTTGACTTCCAGAGGTCCTTCAAGGAGCCTCCATAATAACCGCCATACTTATCACCACATGACAAAAGCTCGCTCCAATAGCCCTGATCTTCATAACATCAAACCACCTATCAACAATAACCCTATTAACATTAGGACTAGCCTCAACAATAATTGGGGGCTGAGGCGGCCTAAACCAAACGCAACTTCGCAAACTGATGGCATTCTCATCCATCGCCAATCTTGGTTGAATAGCAACAATTTCAACCATCGCCCCAAATATTATGCTACTTAACCTAGCCATCTACATTACAATAACAATGCCAGTTTTCATTGCACTAATCTTTTCCTCATCAAAAACGATCAAGGACCTTGGAAACTCTTGAACAACATCCATAACCTCCACAACATTAATAATGCTCGCTATCATGTCTCTAGGGGGCCTACCACCTTTGACTGGCTTCATGCCAAAATGGCTCATCCTACAAGAAATGATCAACCAACACCTCGCTCCCATAGCGACGGCTATTGCCATCTCCGCA---CTACTTAGCTTATTCTTCTACATACGAATGACTTACACCATAACCCTTACTCTGCCTCCTAACTCGATCAACTCAAAATACAATTGACGATTCAAACCAACAATAAAAACTACCCTAATTTCAACAACCCTAATACTAGCCCTATGCCTACTCCCATCAACCCACTTAATAACC---------------T-----AGAAACTTAGGATAGACACA-----AACCAGAGGCCTTCAAAGCCCCAAAC-AAGAGCTCAACA-CTCTTAGTTTCTG-----------AAGACCTGCGAAACCCTAG-TTCACATCTCCTGAATGCAACTCAAACGCTTTAATT-AAGCTAAGGCCTCC-------CTGGATAAACGGGCCTCGATCCCGTAATAA--CTTAGTTAACAGCTAAAC-ACCCTAACCAGC-GGGCTTCTATCCGATTTCGCCCGTAAGAAAAA---ACGGGCG-------AAGCCCTGGACACCTCTCG-----GTGACTTTT--CCAAATTTGCACTTTGATGTGAA----TCACTTCAGGGCT-------------GGAAAGAAGGGGAATTAAA-CCCCTCTTC-ACAGGGCTACAACCTGCCGCCTGCACACT-CGGCCATCTTACCTGTGACC---ATCAATCGTTGATTCTTCTCAACC   [1733]
Gekkoninae            AATTTCCTACCCATTACCTTAGCCCTATGCCTGTGACATATCTCAATCCCCATTGCCCTCGCAGGCACCCCCCCAATAAATCAA------T----------------------GGAAATGTGCCCGAACAGCAT-AAGGACTACTTTGATAGAGTATTTTATAGGGGTTAAATCCCCCTCATTTCC----------TAGAAAATCGGGTCACGAACCCAAACCT--TAAGATCCAAAACCTTATGTACTACCAACTTATACTAATCTCT---------------AGTAGGATCAGCTAAATCA--AGCTTTCGGGCCCATACCCCGACAATGTTGGAAATATCACTCCCGCTCCTACTAC---ATAAGCCCCCTAATTTGATCGCTATTAATCACAGGCCTGTCAACAGGGACAGTCATCACCATGTCTAGTCATCACTGATTACTAGCTTGATTAGGCCTAGAACTGAACACCCTCAGCATCCTTCCCATTATTTCTAAATCACATCACCCACGAGCAACGGAAGCAGCAACAAAATACTTTCTCATTCAAGCCATGGCCGCTGCCCTAATCATGTTCGCTAGCACCTTAAACGCCTGACAGACCGGACATTGATCAATTACAAATACAACCAACATAGTCACAATCACTATAATTACCCTAGCACTTTTATTTAAATTAGGTGCAGCCCCAATACACGCATGATACCCAGAAATCCTACAAGGCTCAACCTTAACAACAGCCATGATTCTAACAACATGACAAAAATTAGCACCAATAACCCTACTCTACATAATTAGCCCCCATCTCCCCCAACAGCTCATTCTTGTAACAGGACTTCTCTCAGCTCTAGTAGGCGGCTGGTCAGGACTAAATCAAACCCAAACTCGAAAAATCATAGCCTTCTCATCAATTGCACACATAGGATGGCTCATTATCGCCCTGCACTTGAGCCTTACCCTCACAACAACAACACTTTTAATTTATATTACTATAACCTCAACCATATTTTTAGCACTTAACACAATAACAATCAAAACTCTCACCGATATAGGCCTTGCCTGATCCCAATCCCCTTCACTCATAACAATAGTAATAATTTCCATTATATCACTAGGAGGGCTACCCCCATTAACAGGCTTCCTGCCAAAATGACTAATTCTAAGTGCCCTCTGCCAAAATAATCTTATTCAACTAAGTGTCCTTCTAGCAGCAGCGAGT---TTACCAAGCCTATTTTTCTACACCCGCATGGCCTACTTCACTGTACTCACCATCCCACCTAACACAACAAGTACACACCTCAAATGACGATTCAAACCCAAATTAACCTGTGGCCTTACAACCACTGTAACAACAACACTAATACTCCTCACCCTCACCCCTCTACTAATCACCACA------------T-----AGAAATTTAGGTTAACTAGTAGTA-AACCGAGAGCCTTCAAAGCCCTAAAT-GGGACCCAA----AACCCAATTTCTGCTCGTG-----AGGATCTGTACAATTCTAA-AATACATCTTCTGACTGCAATCCAGACACTTTCATT-AAGCTAAAACCCCC--------CAGACCAGCAGGCCTCGATCCTGCAAAAC--ACTAGTTAACAACTAATC-GCCTAAACCAGC-GGGCTTTAGTCTACAGCTTCGTCCCGCTGAG---ACGAGGGGAC-----GAAGCCCGGGGCACCATTCCG---GGTGCTTGT--TTAAATTTGCACTTTAACCTCGT------CTCCCGGGCTT-------------AGTAGGAGGGCCTTTA----CCTCCGTTC-ATGAGGCTACAACTCACCGCCTAGTCT---CGGCCACCCTACCTACGATG---CTAACACGCTGGTTTTTTTCGACT   [1745]
Pygopodinae           AACTTTCTCCCAATTACACTCGCCCTCTGCCTCATACACTCAACCCTCCCAATTTCCCTCTCAGGACTTCCTCCAACCACACTA------TAGTTCAA---------------GGACGCGTGCCTGAACACTT--AAGGACTACTTTGATAGAGTACACTACAGGGGTTAAAATCCCCTCGCCTCCTT--------TAGAAGAATGGGTCTTGAACCCACACAA--CAAAGCTCAAAACTTTGCGTACTACCCAATTATACTATCCCCT---------------AGTAAAGTCAGCTAAATA---AGCTTTCGGGCCCATACCCCGAAAATGTTGGTTTTCAAT--CCCTCCTTTACTA----ATAAACCCAATAACATTCACCCTACTCATCTTCTCCTTAGCACTCGGAACTCTAATCACCATGTCCAGCTCCCACTGACTACTAGCATGGGCCGGACTGGAAATAAACACCTTAGCAATCATTCCTATCATTTCAAAACAACACCACCCACGAGCAACAGAAGCCGCAACCAAATACTTTTTCACACAAGCTGCCGCCTCCGCCCTAATCGTCTTTGCAACCACAATTAACGCCTGAAAAACGGGACAATGAGACATCTCTCAAATTTTCCTCCCTGAAACATCCACCATCATTACACTAGCAATTGCTATAAAACTAGGACTAGCCCCCTTCCACTTTTGACTGCCTGAGGTACTTCAAGGCTCCTCCCTCCCAATCGCAATATTAATCTCAACCTGACAAAAACTAGCCCCAACTGCCCTCCTTTTTATAACTATTAATAACCTAAACCAAAACATTCTAATTCTTCTAGGACTTATTTCAACCCTTATCGGAGGATGAATGGGACTAAACCAAACCCAAACACGAAAAATCATAGCATTCTCATCTATCGCCCACATGGGATGAATGTTCACATCCCTAGCTCTTACCCCCTACCTTTCATTACTAATTCTTTTAACCTACCTAATCCTAACCTCAGCAACCTTCATAGCCCTCCTTTCAACAACATCAAAAACCCTTCACGACCTGGGCACAAGCTGAACAATCTCTCCCCCCTTACTCGCAATCACAATATTAACCCTATTATCACTAGGCGGACTACCCCCACTAACCGGCTTCCTCCCTAAATGATTAGTGTTAAAAGAACTAGTCACCATAAACTTCATCACTCTCAGTGTCCTAATAGCCCTATCCACC---CTCCCTAGTCTATTCTTCTATCTCCGAATATCTCACATAACAACACTAACCCTCCCACCAAGCACAACAAGCACCAGCCACGAATGACGATTTAAAACCCGCAACATCATACCAATCACCCCCACTATTATTATTGCAACAATAGCCCTACCAATTTCCCCACTCGTCTTAAACCTTTAT---------TAAC--AGAAACTTAGGTTAACAACAAA---AACCAAGGGCCTTCAAAGCCCTAAAC-ACGGGGACC----CCCGTAGTTTCTG-----------AAGGCCTGTGAAACCCTAT-CTCACATCCTCTGAATGCAACTCAGACACTTTAATT-AAGCTAAAGCCTCA-------CTAGATCGACGGGCCTTGATCCCGTAACTC--TTTAATTAACAACTAAAT-GCCTAAACCAGC-GGGCTTCAATCTA-CTT-CTCCCGTTAGAAAAAA--ACGGGAG------AAGCCCCGGCAACACTTAG-----GGTGCTTGTT-TCAAATTTGCAATTTGACGTGAAT---CACTACTAGGGCTT------------GATAGAAAAAGGACTTAAA-CCAATGTAA-TCAGGACTACAGCCTGCCGCCTAACTCT--CGGCCATTCTACCTGTGATA---ATTTCTCGTTGATTCTTCTCAACA   [1753]
Xantusiidae           AACTTCCTACCCCTAACACTAGCTCTTTGCCTATGACATATCTCATTTCCAATTACACTAACAGGACTCCCCCCCTAC------------TAACACA----------------GGAACTGTGCCCGAATATTT--AAGGACTACTTTGATAGAGTAAGCTACAGGGGTTAAAATCCCCTCTATTCCT---------TAGACAACCAGGATCCGA-CCTACACCT--AAGAGCCCAAAACTCCTCGTACTACCAAC-TATACTACTGTCTA--------------AGTAAAGTCAGCTAAAAA---AGCTTTCGGGCCCATACCCCGAAAATGTCGGTTTAACA---CCCTCCTTTACTA----ATGAGCCCTATCATTCAATCCCTTATTCTATCAAGCCTAGCAACAGGCACAATCATCACAATAACAAGTCAAAGCTGAATCCTAGCCTGAGTCGGCCTGGAAATTAACACACTAGCCATCCTCCCAATCATTTCAAAACCCCACCACCCTCGAGCAACAGAAGCCATAACAAAATACTTCTTAACCCAAACAGCAGCCTCAACTATAATTTTATTTGCAAGTACACTAAATGCATGACACTCAGGACAATGAAACATTATACAACTAACAACGGAACCCGCTTCCACTGTACTAACCCTAGCCCTAACCATAAAACTAGGATTAGCCCCAGTACACTTTTGACTACCAGAAGTAATACAAGGTTCAACTATTATAACAGCCATAATCCTTACTACATGACAAAAACTTGCACCAATAACAATCCTAATCATAACCCACCAAAACTTACCTACAACAATTCTACTAACAATCGGCATCATCTCCTCATTATGAGGAGGATGAGCAGGACTAAACCAAACACAGCTCCGTAAAATCCTAGCATATTCTTCAATTGCACACCTAGGATGAATCTATGTAGCTATTTCAATGGACGAAACAATCACAATTTTAACCCTGCTCATTTACATTTTACTCACCTCTCTAATCTTTTTATCCATAAACACTAGCCACTCAAAGACAATAAAAGACATAGCTACAACATGAACACTTTCCCCCACCCTCACTACCTTTATACTATTAACATTATTGTCTCTAGGAGGCCTACCACCATTAACAGGATTTCTACCAAAATGATTAATTTTACAAGAACTTACAACCCACCACTTAACACCTATCGCCACCCTCCTCGCTTTCTCAACC---CTGCTAAGCCTCTTTTTTTACCTACGACTTTCTTATACTACAACAATCACACTACACCCCAACCCAACCACAATATCAAACAAATGGCGACAAAAAAAATATAAACACTCAAAACTAATCTCAACTATAATACCAGTTACAACTACCATAATCCCAATATCACCAATTATACTC---------------T-----AGAGACTTAGGATAAGACA------AACCAAGAGCCTTCAAAGCCCAAAAT-AAGAGCTAAGC--CTCTTAGTCTCTG-----------AAGGCCTGTAAAATTTTAA-TTTACATCTACTAACTGCAACTTAGATACTTTAATT-AAGCTAAAACCTCA-------CTAGATAGACGGGCCTTGATCCCGCAAAAA--GCTAATTAACAATCAACT-GCCAAAACCAAC-AGACTTCTACCTACCATAAC-----------------------------AAGCCCAGACGCCATTAAA-----GACGTTCTCT-CCAGATTTGCAATCTGGCGCATTTC--ACTTCATAGGCCT-------------GATAAGAACAGGACTTTAA-CCTGTCTAA-ACGGGGCTACAACCCGCTGCCAAAACACT-CAGCCATCTTACCTGTGACC---ATCACTCGTTGACTTTTCTCAACC   [1715]
Cordylidae            AACTTCCTTCCCTTAACCCTGGCCCTTTGTCTTCTCCACATCTCCCTACCAATCACCCTCTCAGGACTCCCCCCTCAACAC---------TAAATCTT---------------GGAGCTGTGCCTGAACCA----AAGGGCTACTTTGATAGAGTAGAACATAGGGGGTCAAACCCCTCAGCTCT-----------TAAAAAAATAGGAATTGAACCTATACCT--GAGAACCCAAAATTCCCCGTACTTCCAT--TATACTTTTTCCT---------------AGTAAAGTCAGCTAAATA---AGCTTTCGGGTCCATACCCCGAAAATGTTGGTTTAACC---CCCTCCTTTACTA----ATTAACCCCTTTATCATCTCACTTTTCATCTCAAGCCTAGCCATAGGCACCATCATTACAATGACAAGCCACCATTGACTAATAGCCTGAGCAGGACTAGAAATTAACACCCTGGCAATTATCCCGATCATAACAAAACCCCACCACCCCCGAGCAACAGAAGCAGCAACCAAGTATTTCCTCACACAAGCAGCTGCCTCTGCCATAATTCTCCTTGCAAGTTCCATCAACGCCTGGCACACAGGACAATGAGACATCACACAACTAACGAACCAACTATCCTCTACCCTAATAACCGCAGCCTTAGCTATAAAACTAGGCCTTGCCCCTACACACTTTTGACTACCAGAAGTAATACAAGGAACAACAATAAAAACAGCAATAATCATCACAACCTGAATAAAACTGGCCCCAATATCTCTTCTTCTATTAATCCACACCTCCCTAAACCACCATATTCTACTATCCCTAGGCGCACTATCTATTTTAGTCGGAGGGTGGGGAGGATTAAACCAAACACAAATCCGTAAAATCATAGGATTCTCATCAATCTCCCACTTGGGCTGAATAACAATTGTCATCACCCTATCCCCTTCCCTAGCTCTCTTAAACCTAACAGTATACCTTATTATTACCCTAACTATGTTTCTCCTGCTAATCTCAACCCAAGCAAAGACAGCCCAAAATATGACAACT---TGGACAACCACTCCAATCACCCCTGCCTTAACTACACTAACACTATTATCCCTAGGCGGACTACCCCCACTCACAGGATTTTTACCAAAATGATTTATCCTACAAGAACTAATTACCCAACAATCCACATTTATCGCCACAGTTGCGGCAATATCTTCC---CTCCTAAACCTATTCTTCTACCTACGACTATCCTACATCACCACCCTTACCACCTCACCAAACACCACCACCCTCTCCAACAAATGACGATTCAAACTTCTCTCAAAACCCATAACAATAATTATATTCATTCTCTCTACCCTCGCTCTACCAATAACCTTTACCCTCGCC------------------T-----AGAAGCTTAGGATAATTTTATTA--AACCAGGGGCCTTCAAAGCCCAAAAT-GAGAGCGGAACC-CTCTTAGCTTCTGA----------AAGACTTGTAGAACTTTAC-TCCACATCTTCTGACTGCAACCCAGACACTTTAATT-AAGCTAAAGCCTTA-------CTAGATAGACAGGCCTTTATCCTGTAAACA--ATTAATTAACAGCTAATC-ACCCAATCCAGC-GGGCTTCTATCTA--TCCTTCTCCCGTTCAAAAAAACGGGAG-------AAGCCCCGGCACACTTTAG-----TGTGCTTCT--TCAAATTTGCAATTTGCTGTGGAGA--TCACCACAGGGCTT------------GATAAGAGTAGGGCTC----CCTACGTCT-TCAGGGCTACAACCTGCCGCCTAAGCT---CGGCCATCTTACCTGTGACC---ATCTCCCGCTGATTTTTTTCAACA   [1729]
Scincidae             AACTTCCTACCTATCACACTAGCCCTCTTTCTATGACACACCTCATTCCCAACAACGCTTTCCGGGCTTCCACCACAA------------TAATTAA----------------GGAAATGTGCCCGAAGCTC---AAGGATTACTTTGATAGAGTAAAACACAGAGGTTAAAACCCTCTCATTTCCTCAAT-----TAGAAAAACAGGGTCCGAACCTGCACTA--AGGAGCCCAAAACCCCCTGTACTTCCAC--TATACTATTTTCT---------------AGTAAAGTCAGCTAATTA---AGCTTTCGGGCCCATACCCCGAAAATGTTGGTTTAAAC---CCCGCCTTTACTA----ATGAACCCAATTATATTATCAGTCATTATTTCAAGTCTGGCCCTAGGCACTATCATTACTATATCCAGCCACCACTGACTGCTAGCCTGAGTCGGATTAGAGTTAAACACATTAGCAATCGTCCCAATCATTGCAAAACAACACCACCCCCGTGCAACAGAAGCCACAACCAAGTACTTCCTCACACAAGCCGCCGCTTCCGCCACAATCCTATTCGCCAGCACAATTAATGCCTGAACATCGGGCTCCTGAGACATTTCACAACTAACAAGCCTACCCGCATGCACCCTTCTAACAATAGCACTATCAATAAAATTAGGACTCGCCCCCCTTCATTTCTGACTACCAGAGGTCCTACAGGGCACCCCATTAACAACAGCACTAATCATTGTAACATGACAAAAACTAGCCCCCCTCACACTACTATACCTGACACAAAACTCACTATGCACAACAACACTACTAATAATAGGGCTACTATCAACTTTAACCGGGGGCTGAGGCGGACTTAACCAAACACAAACACGAAAAATCATAGCATTCTCATCAATCGCCCACCTAGGATGAATAGCAACAATCCTAACACTAGCCCCAAACATTATACTGCTAAACTTAACACTTTACATCATAATAACCACCTCGATATTTTTACTACTAATCACCACCTCAGCCAAAACTATTCAAGACCTAACAACTCTGTGAGCGATCTCACCTACAATATCAGCCCTAGCCCTAACACTACTTATATCACTAGCCGGCCTGCCCCCCTTTACTGGCTTCATGCCAAAATGACTAATCTTACAAGAATTAACAACACACAACCTCTGCACAATCGCAACCATAATAGCACTATCCGCC---CTACTAAGCCTATTCTTCTACCTACGACTATCATACATCTCAACCCTAACCCTCGCCCTAACCCCAACACAGAGCACACACAAATGACGATTCAAGCCAAACACA---ACAACCCCAATAACCCCCACAATCATCCTGTCTACCCTTCTCCTACCAACCACACCACTACTAATC---------------TAA---AGAAACTTAGGTTAACCA-------AACCAGGGGCCTTCAAAGCCCCAAAC-AAGAGCTAGACC-CTCTTAGTTTCTG-----------AAGGCCTGTAAAACTCTAA-TTTACATCTTCTGAATGCAACTCAAACACTTTAATT-AAGCTAAAGCCTC--------CTAGATAGACGGGCCTTGATCCCGTAAAAT--TTTAGTTAACAGCTAAAC-ACCCAATCCAGC-GGGCCTCTATCCG--CGCTTCTTCTGTTAGAAGAAG-------------AAGCCCAGGAACGCCTTTTAG---GGTTCTTCT--CAAGATTTGCACTCTTGCGTGGAA---ACACCACAGGGCTT------------GGTAGAGGCGGGACTAACC-CCGCATAA--GCAGGGCTACAACCTGCCACCTGTTT----CGGCCACCCTACCTGTGACT---ATCAATCGTTGATTTTTCTCAACC   [1726]
Teiidae               CAATTTCTACCTATCACCCTAGCACTATGTCTATGACACACCTCGTTTCCTATCTCCCTATCAGGCCTCCCACCAAAC------------TAA--------------------GGAAATGTGCCCGAGAATTT--AAGGATTACTTTGATAGAGTAAAATACAGGGACACCATAACCCTCATTTCCT----------AGAAAAATGGGATTCGAACCCACACCA--AAGAGACCAAAACTCTTCGTACTCCCACT--ATACTACTTCCT---------------AGCACAGTCAGCTAATCA---AGCTCTCGGGCCCATACCCCGAAAATGTTGGATAAGA----CCAACCTCTGCTAA---ATGTCCCCCCTAATCAACACTATTTTAGTTTTATCAATAATTACAGGAACCCTAATCACAATAAACAGCAGCCACTGACTGCTAGCCTGACTAGGACTAGAAATTAATATAATAGCCATCGTACCACTAATCTCAAAAACCCATCACCCACGAGCAACAGAAGCCGCAATTAAATACTTTTTAGCGCAAACAGGGGCATCACTATTAATACTATTTGCAAGCTCAATCAACGCATGATATCTGGGAACATGAGATATCACCCAACTCACAAACCAAATATCCTGCACCTTACTAACTATTGCCCTTTGCATAAAAATCGGCCTAACCCCAATACACCTATGACTACCAGAAGTAATACAAGGAACAACCCTAAAAATAGCCCTCATCATTGCAACCTGACAAAAACTAGCTCCTATAAGCCTTATTTTAATAACATCTAACAGCCACTCAAAATTTATATTAATATCAATAGCAGCACTATCCATTGTTATTGGTGGGTGAGGCGGATTAAATCAAACACAACTACGAAAAATCATAGCCTATTCCTCAATCGCAAACATAGGGTGAATAGTTATTATTTTACAACAAGCACCGAAACTTACAACACTTACCCTGATCATTTATATTATTATAACCACCACAATATTTATAACCCTTACCCCCCAAAAAACCAAAACAATTAAAACAATTGGAACAACATGGACCCTGTCACCCCCACTAACAATCATTACAATACTCACACTGACATCTCTAGGAGGTCTCCCACCAATAACAGGATTTATGCCAAAATGACTTATTCTAGAAACATTATTACTAGAAAATATAACCACATTAGCAACACTCACTGCAATAGCAACA---CTCCTAAGCCTATTTTTTTACTTACGACTATTTTACTCAACAACCATAATAGTTTTTCCAAACACAACAAACACAACACAAAAATGACGACTCCAAACAAAAACCATACTAATCATAACACTAACTACCCCAACAGCCCTTATACTATTACCAATTCTCCCACTAATAAACCCA---------------TA----AGAAATATAGGCTAATTTATCA---AACCATGGGCCTTCAAAGCCCAAATT-GTGAACTA-----CTCACTATTTCTGC---------TAAGACTTGCGTTATTCA---AACACATCTCCTGAATGCAACTCAGACACTTTAATT-AAGCTAAAGCCTCC-------CTGGATAAGCGGGCCTCGATCCCGCGAAAA--TTTAATTAACAGCTAAAA-ACCCAAGCCAGC-GGGCTTTTATCCA--CTTTCCCGTCGCTTTT-ACGACGGGA--------AAGCCCCGGCACTTCTG-------GGTGCTTAT--CCGAATTTGCAGTTCGATTTGTA----------CGGGACTT------------GATAAGAGGGGACA------ACCCCGTCG-TCAGGGCTACAACCTGCCGCAATAACT---TTGCTACCTTACCTATGACC---ATTACTCGTTGATTTTTTTCTACA   [1711]
Lacertidae            CAGTTTCTCCCAATTACACTAGCACTTTACCTGTGATACATTGCACTTCCCATTACATTAGCAGGTCTCCCACCTATAAAC---------TAGCACCC---------------GGATGTGTGCCCGAGTATTT--AAGGGTTACTTTGATAGAGTAAATTACAGGGATTAATTACCCCTCACCTCCTT--------TAGAAGAATAGGAATTGAACCTACACCT--GAGATCCCAAAACTCTCTGTACTACCTCT--ATACTACCTTCC---------------AGTAAAGTCAGCTAACTA---AGCTCTTGGGCCCATACCCCAAAAATGTTGGTCAAAC----CCCTCCTTTACTA----ATGAACCCACTAATCTCATCCCTAATACTCTCCAACTTAGCCCTAGGGGTAATCATTACCGCCACCAGCTTTCACTGATTCCTAGCATGAATCGGCCTAGAACTAAACACCCTAGCCATTATTCCCATCCTAGCCAAACAACATCACCCACGTGCCACTGAAGCAGCCACAAAATACTTTATCATTCAAGCAACAGCATCCACCATCATCCTATTCTCAAGCACATTTAATGCTTGACACACCGGAATCTGAGACATCACTCAACTATCCACATTTCCTACTACTGTGATACTAACAATTGCACTAACCATAAAACTAGGACTAGCACCCATACATTTCTGACTTCCCGAAGTAATACAAGGTGTTACCCTTTCATCAGCCCTAATTATTACAACATGACAAAAACTACCCCCCATAACTCTACTCTATTTAACTACTCCCAACCTCCCAACTCCAGTTCTACTTATATTAGCTATAACTTCAACAGTAGTTGGAGGTTGATCAGGGCTCAACCAAACCCAAATACGCAAAATCATAGCCTATTCATCAATTGCACACCTAGGATGGATAGTCGCAGTACTTTCCCTATCGCAAAACCTCCTATTATTTACATTACTTATTTATATCCTCATAACCTCTTCTATGTTTTTAATTCTCATTACCTCTTCATCAAAAACATCTAAAGACCTAGGACAGCTTTGATCAACCTCCCCAACTATTACATCAATTTCCCTAATTACCCTTATCTCACTAGGAGGTCTACCCCCGCTCATTGGATTCTTACCAAAATGACTCATCTTAACAGAACTAACAACCAACCACCTTACTCCCCTAGCAGTCCTCCTCGCCCTATCCTCT---CTCCTCAGCCTAATATTTTACATACGATTAACATACACAACAACACTTACAATTTCCCCGAACACAACTAACTCCATGATAAAATGACGATTCAAGCTAGCTAAACCACTCAACAAAATTCCAATAATTACCACCCTTCTTATTATTACCCCGATTCTTCCACTAATTTCCCCT---------------T-----AGAAACTTAGGTTAGTCCTAA----AACCAGAAGCCTTCAAAGCCTCAAAC-AGGGTACACATA-TCCCTAGTTTCTGA---------TAAGACCTGTATAACCTTGA-TATACATCTCTTGAATGCAACTCAAACACTTTAATT-AAGCTAAGGCCTCTT------CAAGATGGACAGGCTTTGATCCTGCGAAAC--TCTAGTTAACAGCTAAAA-ACCCAACCCAGC-GGGCTTCCATCTTCCTTCCCCCGTTATAAAAA--AAACGGGGG------AAGCCCCGGCACCTTAAT------GGTGCTTCT--CCAAATTTGCATTTTGGCGTAA-----TTACCTCAGGGCTACT----------GATAGGGGGAGTAAC-----CTCCGTAT--TGGGGTTTACAGCCCCACGCCTTACT----CAGCCACCCTACCTGTGTCT---CTAATTCGTTGATTTTTTTCAACT   [1735]
Rhineuridae           CAATTCTTGCCAGCTACTCTGGCACTATGCATATGACACACCTCCTTACCGATCTTTATGGTTGGCCTACCACCACAATAACCC------TATTACCAAT-------------GGAAGTGTGCCTGAACAAT----AGGACTACTTTGATAGAGTAGAATATAGGGACTTAG-CCCCCTCACTTCCGTAC------TAGACAGATGGGACTCGAACCCACACAA--AAGAACTCAAAATTCTATGTACTCCCACT--ATACTACTCCCT---------------AGTAAGGTCAGCTAAACA---AGCTCTTGGGCCCATACCCCAAAAATGTCGGTTATAAA---CCCACCCTTACTA----ATGAACCCCCTCACCATATCCATAATTATATCAAGCATTGCCGCTGGAACAGTACTAACAATATCCGCCAATCACTGATTAATTGCCTGAGTAGGCCTAGAGATTAATACATTAGCCATTCTACCAATTATCGCCACCGAGCACCACCCACGAGCCATGGAAGCCACAACAAAATACTTCCTCATCCAAGCAGCAGCATCCTCCACAATCATATTTTCAAGCACAATTAATGCCCTAGAAACAGGACAATGGGACATTACACAACTCACCTACCCACCAGCTACAGCCCTACTAACAATTGCACTAGCCATAAAACTAGGCCTAGCACCCATACACCACTGACTACCAGAGGTCATACAAGGAACAAAATTAAAAACAGCCCTAATCATCGCAACATGACAGAAACTGGCACCAATATCCCTACTATACATAACCTTTAATAACCTGTCAACACAAATCCTATTGCCGCTAGCCCTCACCTCAACACTACTAGCCGGCTGAAGCGCATTAAACCAAACACAACTACGAAAAATTATAGCATTCTCCTCAATTGCACACATCGGCTGAATAATCAGCATCTTACCGCTAGCACCAACAACATCATTAATTGCCTTAGCAGTATATATTATTATAACTACAACAATATTCTCATCCCTTCTAACCTGTACATCAAAAACAATCAAAGATCTTGGATTAATATGAACAGTCTCACCACTATTATGCGCCAGCTCAATACTAACCCTTATATCATTAGCTGGACTCCCACCACTGTCAGGCTTCCTACCAAAATGATTAATTCTACTAGAACTAGTTTCACAAAACCTAACAGCCACAGCCACACTAATAGCAATAACATCC---CTACTAAGCTTAGCATTTTACACACGTCTAGCATACACCACAACACTAACCATCCCCCCTAATCAAACAACCACAAAACACAACTGACGATTTAAAACAACACAA---ACAACCATTATACCAATCATTCTACCCATAACCGCCCTCCTACTACCACTTACACCAATAATCTCAG--------------CAAGAGAGAAACTTAGGATAATACTTTA---AACCAGGGGCCTTCAAAGCCCTAAAC-AAGAGCACCCACCCTCTTAGTTTCTGT----------AAAACCTGTGTAACTCTAA-TACACATCCTCTGAATGCAACTCAGATACTTTAATT-AAGCTAAAGCCTCA-------CTAGACAGGCAGGCCTCGATCCTACAAACA--TTTAATTAACAGCTAAAC-ACCCAACCCAGC-GGGCTTCTGTCCG-CTTCTCCCGTCAAAAAAAACGGGAG----------AAGCCCCGGCACCTTATGG-----GGTGCTTCT--CCAAACTTGCATTTTGGCGTGTGA----CACTCCGGGGCTACTTT--------GTTAGCGAGAGGGGTGCA--CCTCTGTCT-GCGGGTCTACAGCCCGCCGCCTAAGCT---CGGCCACCCTAACTATGTAC---ATAACTCGTTGATTATTCTCAACA   [1749]
Bipedidae             CAATTCCTTCCCCTATCCCTCGCCATTTGCCTATGACACACCTGCTTACCAATTGCCGTTGCTGGCCAACCACCAAGCAAC---------TA---------------------GGACCCGTGCCCGAGACCAA--AAGGACTACTTTGATAGAGTATGAAC-AGGGGTTTAAATCCCCTCGGCTCCA---------TAGAAAAATGGGCATCGAACCCATCCTT--CGGGGTCCAAAACCCCGCGTACTACCACT--ATACTACTTACT---------------AGTAAAGTCAGCTAGCACA--AGCTATTGGGCCCATACCCCAAAAACGTTGGAAATAT----CCATCCTTTACTA----ATTAACCCCTATACGCTCACCTTCATAGCATCCATAATAATCACCGGCACAGCCATCGTAGCCACCTCTTCACACTGACTTCTTGCCTGAATCGCCCTCGAACTAAACACAATAGCAATCTTGCCACTACTAACACAAACACACACCCCCCGGACGACCGAATCAGCAACAAAATATTTCCTTATTCAAACCGCAGCCTCAACCACACTTCTATTCGCGAGCACAACAAACGCCTGAATCACAGGCCAATGATCCATCAACCAACTAACCCTGTGCCCAACAAACGTAATTATAACATTAGCCCTACTAATAAAACTAGGTGTCGCCCCAGTACATGCATGACTCCCCGAAGTCATGCAAGGCGCCTCAACTACCATAGCACTAATCATGGCCACATGACAAAAACTAGCCCCGTTCATCCTACTCTACACAATTTCAAACAACACGTACACAACACTACTCCTCCCACTGGCACTGCTATCAACTACACTTGGAGGCTGAGGCGGACTAAACCAGACACAAATCCGAAAGATAATGGCATTCTCCTCAATCGCCCACCTAGGCTGAGCTATCGCCACATTAACATTCAACCAAATACTCCCGCTACTAACACTAGCCATATACATCATCATAACCTGATCAATATTCTCACTCATACAAACGACACACACAAAAACACTCAAGGACACCTCCACAGCCTGATCTACAACCCCACATGCAATGATAATATTACTAATAACACTTCTCTCACTTGGCGGACTACCGCCACTATCAGGCTTCATACCAAAGCTACTAATCCTAAAAGACCTAGTAGAAACCAACCTTGCCTTCACCGCCACAGCCATAGCAATTACCTCC---CTCCTCAGCCTGGCATTCTATGTACGCCTGGCGTACACCACATCCCTAACTATCGCCCCCACCACAACTACAACAAAAATCAACTGACGAATACCCCCAAACCGCCGCACAATGCACACAGCGGCCACCATCACACTAACTACAATACTACTCCTACTCACACCAATCCTCGCCCTATGC---------T-----AGAAGCTTAGGTTACAAATATCCCAAACCAGGGGCCTTCAAAGCCCCAAAC-AAGATCAAAC---ATCTTAGCTTCTG----------CAAGACTTGTATGCCTTTAG-CATACATCAACTGACTGCAAATCAGCCACTTTAAACTAAGCTAAAGCCTT--------CTGGACCGGCAGGCCTTGATCCTACAAACA--CTTAATTAACAGCTAAGC-GCCCAAACCACCCAGGCTTCAGTCCGCTTCTC---------CCTAGAAAGGAGAG-------AAGCTCTGGCCGCTCCG-------GCGGCGTGG--CCAAATTTGCAATTTGGCTCGCA----------CAGAACTACTT---------GGTAGAAGAAAGGACTCGAACCTTCGTCA-AAAGGGCTACAACCTTCTGCCTACCCGCT-CAGCCACTCTACCTGTGTCA---CTCACCCGTTCATTCTTCTCAACA   [1731]
Amphisbaenidae        CAATTTCTGCCATTTACACTTACAATATGCCTATGACACGCGACTATGCCACTCACCACAACCTGCCTACCCCCCGCCTAC---------TA---------------------GGAAGCGTGCCTGAATATA---AAGGGCTACTTTGATAGAGTAGACCATAGGACTTACC--CTCCTCACTTCCT---------TAGAAAACTAGGTCTCGAACCTACACTG--CGGGAATCAAAACCCCACGTACTACCACATTATACTATATTCT---------------AGTAAAGTCAGCTAAAAA---AGCTCTTGGGCCCATACCCCAAAAATGTTGGTTTAAC----CCCTCCTTTACTA----ATGAACCCGTACGTTGCCTCGCTCCTAGTCTCCTCCTTTGCCACTGGCACAATCATCGCCGCTTCATCAAATCACTGACTAATAGCCTGAATTGGCCTAGAACTCAACACCCTCGCCGTCCTCCCCCTAATAGCAAAAACACACACACCACGTGCGACAGAGTCCGCCATCAAATACTTCCTAACTCAAACAGCTGCGTCAATCGTACTACTATTAGCCATCACCATAAACGCCCACACCACCGGCCAATGAGACATCACTCAAACTACGACCCAACCTGCACTAACCATGCTAACACTAGCCTTGGCAATAAAACTTGGCATCGCACCCCTCCATGCTTGACTACCAGAAGTAATACAAGGGACCACCCTTAAAATAGCCCTCATCATGGCAACATGACAAAAACTTGCCCCCTTTACCCTATTATACACGCTAGCCCACATATTACACACCCCCACCATTATAATACTAGCAACCATCTCCATCTTGCTGGGCGGCTGAGCCGGCCTAAACCAAACACAACTCCGCAAATTAATAGCCTTTTCATCAATCGCACACCTAGGCTGAATCATCGCTGTCCTAACCACAAACAAGCACATTGCATTAATCACACTAGCTCTATACATCTGCATAACAACCACAATATTTACCACCATGCTACCAACCGACATAAAATCACTACAAGACACCGCCACAAGCTGAACAACCGCCCCTCCAATAATACTAACAGCCCTCCTAACACTCATCTCCCTTGGCGGACTACCCCCAACCACGGGCTTCCTAATAAAATGGTTCATCCTAAAAGAACTCACCTTTATGAACCTCCAAATTATTGCCACACTAATAGCCACAGCCTCC---CTACTAAGCCTCCTTTTCTACATCCGCATCACATATGTAATAACCCTAACAATTTCCCCAACCACACCCCCAATAAAACTAAAATGACGACTACCCACGCCTACCAACACACTCATGTACATAACCATCCCAATTACCGTAATGGCCTTACCACTGACTCCCCTACTAATCACAAAT------------TA----AGAGACTTAGGTTAACAA-------AACCATGGGCCTTCAAAGCCCAAAAC-AAGAGCGGGA---CTCTTAGTCTCTG----------TAAGACTTGTACGAACCAAC-CGCACATCATCTGAATGCAACTCAAACACTTTTATT-AAGCTAAAGCCTTA-------CTGGACCGGCAGGCCTTGATCCTGCACTTT--CCTAGTTAACAGCTAGGCGCCCTAAACCAGC-GGGCTTCAATCCGACTTCTCCCGGCTATAAAACGGGAG-----------AAGTCCTGGCCGCGCTTCC-----GCGGCGAGG--CCAAATTTGCAATTTGGCTTGACC---------CAGGACCTCGTTTGTT----GGTAGGCAAAGGACTCTAA-CCTCTGTAC-GGGGGTTTACAGCCCCCCACTTAACACT--CAGCCACCCTACCTGTGACC---CTCACCCGTTGATTTTTCTCTACA   [1732]
Trogonophidae         CAATTTCTTCCTCTTACACTCGCCACCTGTCTCTGACACACAACAATGCCAATCACACTAAACGGTCTGCCCCCTTCATAT---------TA---------------------GGAAGCGTGCCCGACCTAT---AGGGGCTACTTTGATAGAGTAGACCACAGGAGTTTAAATCCCCTCACTTCCCT--------TAGAAAAACAGGCCTCGAACCTGCACCA--CAGAGCCCAAAACTCCATGTACAACCACT--ATACTATTTCCT---------------AGTAGAGTCAGCTAAATA---AGCTTTTGGGCCCATACCCCAAAAATGTTGGTAATCC----CCCTCCTCTACTA----ATGAACCCACTCCTTTGCTCCATACTATTTTCCTCCATAGCCACAGGGACAATCATCGCTGCCTCAGCAAACCACTGACTACTGGCCTGAATAGGCCTAGAATTAAATACACTGGCCATCCTTCCCCTCCTAGCAACAACCCACACACCACGTGCAACAGAAGCTGCCACCAAGTACTTTCTTATCCAGGCCGCGGCCTCCAGCATACTACTCTTAGCCAGCATTATTAATGCACAAATAACTAGTCAATGAGATATCACACAACTAACCACACAACCTGCAATTACCATACTAACTCTAGCCCTTATAATAAAACTAGGTGTAGCCCCAATACATAGCTGATTACCAGAAATCATACAAGGGACAACTACACAAATAGCACTAGTAGTAGCCACCTGACAAAAACTGGCCCCTATTGCTCTACTTTTTTCCACCGCACACACACTACACACACCAACAATCCTAGGACTAGCTCTTCTATCAACCCTAATTGGTGGATGAGGCGGCCTAAATCAAACACAACTGCGAAAACTAATAGCCTTTTCATCAATTGCCCACCTAGGCTGAATCATCTCAATAATACCGCTAAACATAAGCCTAACTATAATTACACTAACTCTATACATTATTATAACAACAACAATATTTATAGCAATATCCCTAACTAACACGAAATCACTTAAAGATATCACCACAACATGGAACAGCATCCCATCAACAATAGTCCTACTACTACTCACACTTATCTCACTAGGAGGCCTACCCCCCCTCTCCGGCTTCATACTAAAATGGCTCATCCTAAAAGAACTAGTCTTTACAGACCTTTCCATTACCGCTACACTCATGGCACTGGCCTCG---CTACTAAGTCTAATATTCTATATTCGCCTGGGATATCTGACCTCACTCACTATTTCACCTAATACCAACATGATAGAAACAAAATGACGCCTAAAACCCAACCACCACACAGCCGGTATCACCACTACCATAGCAATAACAATCATACTACTACCACTAATACCCGTACTAATCACCCAT---------T-----AGAAACTTAGGTTAATCTA------AACCTGAAACCTTCAAAGTTTCAAAT-ATGAGCGAAACCACTCTTAGTTTCTG----------TAAAGCCTGTGCGCAACTAT-CGCACATCATCTGAATGCAACTCAAATACTTTAATT-AAGCTAAAGCCTTA-------CTGAACTGGCAGGCCTCAATCCTGCAATCT--CTTAGTTAACAGCTAAGC-ACCTAAACCAGC-GGGCTTCAGTTCGCTTTTTTTTCTCGAAAAAAGCGAGA-----------AGGAACTGGCCGCGGCCTAC----GCGGCAAGG--CCAAATTTGCAATTTGGCTCGAT----------CAGCACCTCCCT--------GATAGGAAAAGGACTCAAA-CCTCTGTAA-AGGGGACTACAGCCCCCTGCTTCACTCT--CAGCCACCCTACCTGTGATA---CTTACACGTTGATTTTTCTCCACA   [1734]
Helodermatidae        CAATTCTTGCCAATTACATTGGCGCTATGTCTCTGACATATCTCATTTCCAATTTCACTCTCCGGACTACCACCAATAATTACA------TA---------------------GGAGATATGCCTGAACTA----AAGGGCTACTTTGATAGAGTAAAAAATAGGGACTTAGC-CCCCTTATCTCCT---------TAAAGAGACAGGATTTGAACCTGCACCA--AAAAACTCAAAATTTCATGTACTTCCTTT--ATACTACCCTAT---------------AATAAGATCAGCTAAACA---AGCTCTCGGGCCCATACCCCGAAAATGTTGGTTCGAAA---CCCGCTCTTATTA----ATGAATCCCATAATTACAATAATCTTAATCTTCAGTATTACTACTGGAACCATTATTACCATATCCAGCCAACATTGACTTCTTGCCTGGATGGGGTTAGAACTTAATACACTAGCTGTTATCCCAATCATTTCAAAAAAACACCACCCGCGAGCAACTGAAGCTGCAACTAAATACTTCTTAATTCAAGCTGGTGCCTCAGCCATAATTTTATTTTCCAGTATTATTAATGCATGATTTATAGGACAATGAGATATTCTACAACTATCAGACCCATTAGCTAAAACTCTACTTACAATTGCACTAATAATAAAACTAGGACTAACCCCCCTTCACTTCTGATTCCCTGAAGTTCTTCAAGGATCATCACTTACAACAGCACTAATCTTAGCCACATGACAAAAACTTGCACCAATGACCCTCCTTTATATAACAGCACACCAGATCTCAACAACTATTCTTTTAATTATTGGAACCATATCAACAATTGTAGGCGGCCTAGGCGGACTAAACCAAACACAGCTACGAAAAATAATAGCATTCTCCTCAATTGCCCACTTAGGTTGAATAACAGCAGTTATCACATTATCTACAAACCTAGCAATATTTAACCTAGTCATTTATATCCTTATTACAACTAACACATTTATAATCTTTATTTCTCTATCAACGAAAACAATTAAAGACATAGGAACAACATTAAACACAACACCTATACTAGCTACAATACTAATAATTGTCCTCTTATCAATAGGAGGCCTTCCACCACTATCTGGGTTCCTGCCAAAATGGCTTATTTTACAAGAACTAACAACCCAAAACCTATTACCAGTAGCCATTCTTATAGCTATAGCTACG---CTCCTCAATCTATTCTTCTACCTACGACTGGCATATACAACAGCCCTCACCCTACCCCCAAACGCAATAGGAGTATTAAACAATTGACGATTTAAAGCAAAATCAACAAGCCTTCTACTAACCACGACCTTTCCACTCTCCATTATAATAACACCTCTGATACCCATCATTCAGCTA------------TAAC--AGAAATTTAGGATCACCATTA----AACCGAGGACCTTCAAAGCCCTAAAC-AAGAGTAATA---CTCTTAATTTCTGG---------AAAGACCTATAAAACTTTAA-TTTATATCCTCTAAATGCAACTTAGATACTTTAATT-AAGCTAAGACCTTA-------CTAGATAGATGGGCCTTGATCCCATAAACA--ATTAATTAACAGCTAACC-GCCCTAACCAGC-GGACTTCTATCTA-CTTCTCCCGCCTCTTA----AAACGGGAG------AAGTTCCGGGGATCTTA-------ACTCCATTT--CCAAGTTTGCAACTTGACGTAATT---CTACTACAGAACTAT-----------GATAAGAGAGGAATTTA---ACCTCGTTA-GCAAATTTACAATCTGCCGCCTAACTCT--CGGCCATCTTACCTGTGACC---ATTACTCGCTGACTCTTTTCAACT   [1734]
Anguidae              CAATTCCTACCAATAACACTAGCCCTCTGCCTATGACATATCTCCTTCCCCCTATTCCTATCAGCAATCCCCCCAATC------------TAACACTAAA-------------GGAACTGTGCCTGAACTA----AAGGGTTACTTTGATATAATAAACAATAGAGGTTACAGTCCTCTCAGCTCCA---------TAGAAAAACAGGAAATGAACCTGTACTT--AAAAACTCAAAATTCTTCGTACTTCCATT--ATACTACCTCCT---------------AGTAAAGTCAGCTAACT----AACTTTTGGGCCCATACCCCAAAAATGTTGGTTTAAAC---CCTTCCTTCACCA----ATGAGCCCGTTAATCACCACAATCTTAATACTTAATCTTGCAACAGGCACAATCATCACTATATCAAGCCATCACTGACTTCTCGCATGAATGGGACTAGAACTAAACACTCTAGCAATTCTCCCTATCATTTCAAAATCTCACCACCCTCGCGCTACAGAAGCCTCAACAAAATACTTCCTTACACAAGCCACAGCTTCAGCACTTATCCTATTCTCAAGCCTAATCAACGCCCAAACTACAGGTCAATGAAACATCCTGCAACTAGAACACCCCATTGCCCAAGTCCTTCTAACAATAGCACTAGCAATAAAACTAGGCCTTTCACCTGCACACTTCTGACTACCAGAAGTACTACAAGGCTCATCATTAAAAACCACCCTAATCATTATCACTTGACAGAAACTAGCCCCAACAACAATCCTCTTCTTAACATGAAACCAGATATCCACACTTACAATCACAACAATAGGAATCCTGTCAGTGCTAACAGGCGGCCTAGGCGGCCTAAACCAAACACAACTACGAAAAATTATGGCCTTCTCATCTATCGCCCACCTAGGATGAATGGCCACAATCATCACCAAATCCAACAAACTAGCCTTCCTAAACCTAATAATCTACATTATAATCTCCTCCCCCCTAATACTAACACTAATCCTCTTCTCTACAAAAACGGTCCCTGATCTTACAACCACATGAACAACATCACCACTCTTAACCACACTTACCATAACAACCCTCCTGTCACTAGGAGGCCTACCCCCACTAACCGGATTCCTACCAAAATGACTAATCCTAGAAGAACTTCTAAAACAAAACATAACCTTGCTAGCCACTCTAATAACCATAATAACC---CTCATAAGCCTATTCTTCTACCTTCGTCTGTCCTACACCCTTTCAGTAACCATCACCCCAACACCAACCATAACTACAAACAAATGACGAATTAAACCAAACATAACAACACCCCTACTATCAACAGCACTCCCCATCTCACTAATAGCACTACCACTAATACCGCTCATCAAACCC------------TA----AGGGGCTTAGGATAATCTTA-----AACCAAGAGCCTTCAAAACTCTAAAT-AAGGGCCCATAA-CCCTTAGCCCCTG----------AAAAACCTGTAGAACTCTGA-TCTACATCTTCTGACTGCAATCCAGACACTTTTATT-AAGCTAAGGCCTTA-------CTAGACAAACGGGCCTCGATCCCGTAAACA--ATTAATTAACAGCTAAAC-ACTCTATCCAGC-GAGCTTTTGCCTA-CTTCTCCCGTTAGTAGAAAAAAACGGGAG------AAGCCCAGGAAATCTTCG------ATTTCGACT--CCAAGTTTGCAACTTGGCGTGTTAA--ACACCACCAGACTTT-----------GATAAGAAAAGGAATTTAA-CCTCTCTAA-ATAGGACTACAGCCTACTGCCTAAACACT-CGACCATCTTACCTGTGACC---ATCACCCGCTGATTATTCTCAACC   [1743]
Varanidae             CAATTCCTACCCCTCACAATGGCCCTCTGCCTCCTACAAACCTCCCTCACAATTTCACTCGGAGGACTACCTCCCCTACCCAAC------T----------------------GGAAATGTGCCTGAACTA----AAGGGCTATTTTGATAGAATAGACCATAGGAACAACAC-TTCCTCATTTCCCC--------TAGAAA-ACAGGACTCGAACCTGTACTA--TAAAACCCAAAATTTTATGTACTTCCATT--ATACCAACTTCT---------------AGTGAGGTCAGCTAACCA---AGCTATCGGGCCCATACCCCGAAAATGTCGGTTACAAA---CCTTCCCTCACTA----ATCAACCCCCTCATTAACTTCACCCTACTTTTCAGCATAATCATCGGAACCGCCCTAACAATAACCAGCCACCACTGAATAATAGCATGATTAGGCCTAGAATTAAACACCCTGGCCATCATTCCTATCATCTCAAAAACCCACCACCCACGAGCAACTGAAGCCTCAACAAAATACTTCCTAATCCAAGCCGCTACCTCCGCACTAATCCTATTTTCCAGCACTATCAATGCACTCTTCCACGGAACATGAGACATTACACAACTCTCAGACAGTCTGGCCAAAATTATGCTAACTATCGCCCTCGCCACTAAACTAGGCCTCGCCCCCATACACTTCTGACTCCCAGAAGTACTTCAAGGAGTACCAATACTCACAGCACTTATCATTACCACCTGACAAAAAATCGCCCCAATATCACTCCTCATCATAACCTCAAAACTCATCCCCACCCCCATCACCCTCACCATAGGACTTACATCAACAATCGTGGGGGGATTAGCCGGCCTCAACCAGACCCAGCTTCGAAAAATAATAGCCTTCTCCTCAATCGCCCACCTAGGTTGAATGACTGTAATCATTACAATTACCCCAAGCCTCTCACTATTTAATCTAACCCTATACATCACCCTCACATCTTCAGCAATACTTGCTATACACATTACATCATCAAAAACACTTCAAAACACAGCCCTCAGCTCCACACACTCACCCCTCATAGCCAGCCTCTTCCTACTATCCCTTCTCTCACTCGGAGGACTTCCCCCCCTATCAGGATTCTCCCCTAAATGACTCATCCTCCAAGAACTAATCCTCCACAACCTCACCCCCTTAGCCACAGCAATAGCTATCACAACC---CTCCTTAGCCTAATATTCTATCTACGAACCACTTATATTTCAACTATAACTCTTCCCCCCCTTACCACCCAAACCAAGCACACATGACGCCTAAAACCTAACCCCAACACCTCCCCACTATCCACCTCAATCCCGATTTCACTCCTCCTTCTGCCAATCACACCCCACCTCACTCAG------------TAA---AGAAATTTAGGTTCATACTTA----AACCAAGAGCCTTCAAAGCCCTAAAA-AAGAGCACAAAC-CTCTTAATTTCTG----------CAAGACCTATAAAACTCTAA-TCTATATCTCCTGAATGCAACTCAGACACTTTCATT-AAGCTAAAGCCTTC-------CTAGATAGACGGGCCTCGATCCCGTAACAA--ACTAATTAACAGCTAGCC-GCCCAAACCAGA-GGGCTTCTATCTA-CTTCTCCCGTTTGGGGAAA-AAACGGGAG------AAGCCCAGGGGTAATCC-------TACCCACTC--TCAGATTTGCAATCTGATGACA---------CTCTGAACTGCATCT-------GATAAGGAAGATCTTAC---CTCTTGTGA-GTAAATTTACAATTTACCGCCTACT-----CAGCCACCTTACCCATGACC---ATCACCCGCTGACTATTCTCCACC   [1731]
Serpentes             CAATATCTTCCACTCACCCTAGCTATATACCTTCTAAACACCTCCACTAGTATAGCTTTATGCGGTACACCCCCACAA------------T----------------------GGGGGTGTGCCCGAGT------AGGGACTACCTTGATAGAGTAG-ACACGGAACCATAAAACTCCCACCCCTCC---------TAGAAGGCCAAGACTCGAACTTGAACTA--AAAAGCCCAAAACTTTGCATACTACCAAT--ATATTACCTTCTA--------------AGTAAGGTCAGCTAAATA---AGCTATCGGGCCCATACCCCGAAAATGCCACA---------ACGGCCCCTACTA----ATTAACCCAATATCCTGATTAATTATCACAACAAGCATTGCCCTAAGCACCACTATAATCACATCAACAACACACTGACTTATAACATGAGCCTGCCTAGAAATTAACACCCTATCCATAGTCCCACTAATCTCAAAACCAAACCACCCCCGAGCAACAGAAGCAGCAACAAAATATTACCTAATCCAAACCATAGCCTCCACCTCTATACTATTTGCAGCCACAACAAATGCCTTAAACACCTCAAACTGAGAAACCCATCTCACAACAGAACCAATAGCAACAACTATTATTACACTAGCCCTCATAATAAAAATGGCAGCTGCCCCATTCCACTCCTGACTCCCAAGCGTATCACAAGGCACAACAACCCTAACAACCCTAACCATCCTAACCTGACAAAAAATTGCCCCACTAACAATTCTATTAACCACCCATAATAAAACAAATATTACCCTAATCCTACTATCCGCAATACTATCCATCACAATAGGAGGCCTTGGAAGCCTTAACCAAACCCAACTACGAAAACTAATAGCCTTCTCATCAATCGCTCACACGGGCTGAATCATAGCAACTATCACAATAGCACCAAAAATCTCAACCTTAACCTTCACAATTTACATCATAACCACCATCCCCACATTTCTACTAATCAACACTACAATATCAATAACAATCAAAGACCTAGGAACCATGTGAACCAACTCCCCATACACCATAACTATCCTATCTATAACCATCCTATCTATAGGAGGACTACCGCCCCTATCAGGATTCATACCAAAATGGTTAATCTTAAATAATCTAATTTCAATAAACATAATTACAGAAGCAACCCTAATAGCCATAGCCTCA---CTACTCAGCCTATACGTATATATGCGACTAACATATATATCATCAATAACACTATCACCCCACACTACAACCATACCATTAAAATGACGGACATCAAATAAAAAACATCCTATAGGAACCTCAATACTAACAATAATAACAATACTTCTTCTACCCCTATCACCAAATATA------------------T-----AGAAGCTTAAGTTATATTA------AACTAGGAACCTTCAAAGTCCCAAAA-AAAGACC------ACTTTAGTTTCTGTT--------TAGAGCTTGCAGAAAC-----ACCACATCTACTGCTTGCAACACAGACATTTTAATT-AAACTAAAGCTCT--------CTAGATTAGCGGGCCTCGATCCCACAAAA---ACTAATTAACAGCTAGCT-GTCAAAACCGGC-GGACTTTAATCTAGCTTCTCCGTTTTTGGACGAAAGAAAAAACGGAG--AAACCCGGGGCCG-----------CTGCCGACT--TCAGATTTGCAGTCTGACATGTTAC--ACACCTCCGGGTTT------------GGTAGCAAGGAATA------TCCTATTA--ATAATTTTACAGATTACCGCCTAAAT----CAGCCATACTACCCGTGTTC---ATCACTCGTTGACTATTCTCGACA   [1700]
Leiocephalus          CAATTTTTACCAATTACATTAGCCATGTGCCTATGACACACCACACTTCCAATCGCAATATTTGCTTTTCCCCCACAA------------TAACA------------------GGAAATGTGCCCGAGAACC---AAGGACCACTTTGATAGAGTGTTACACAGGGGTGAAACTCCCCTCATCTCCT---------TAGAAGAACAGGAATTGAACCCGCACTT--AAAGACTCAAAACCTTTTGTACTCCATT---ATACTATCTCCT---------------AGTAAAGTCAGCTAACCTA--AGCTATCGGGCCCATACCCCGAAAATGTTGGCCAAACC---CCTTCCTTTACTA----ATGAGCCCGCTTACAACAACAATCCTTCTATCCAGCCTAGCAACAGGCACAATCATTACTGCAACCAGCTACCACTGATTAATAGCCTGAATTGGGCTAGAACTAAACACACTAGCCATCATTCCGATTATCTCAAAACGACACCACCCGCGAGCGACAGAGGCCGCAACTAAATACTTCTTAACCCAAGCAGCCGCCTCGGCCCTAATCCTATTCTCAAGTACAATTAATGCCTGACACTCAGGAACCTGAGACATTACACAAACAACTAATAATATATCAAACATTCTACTAACAACAGCCTTAGCCATAAAACTAGGCCTAGCACCCACACACTTCTGACTACCAGAAGTCCTACAAGGGACCTCGATGATAACAGCCCTAATTATCAGCACCTGACAAAAACTAGCACCAATAGCCCTTATCGTACTAACAAACAATAACTTATCTTCAACCGTGCTGATAACAATAGGTATTTTATCTGCCATCATTGGGGGCTGAGGCGGACTAAACCAGACCCAAACACGAAAAATCATAGCATACTCATCCATCGCACACCTAGGCTGAATGGCAATCATCACCCCACTAATAACTAACCTACTCATTTTAAACCTAATCATATATCTACTTATAACGACATCAACATTCTTAACCCTTACATTTTCAAAATCAAAAACATTACAAGATATCGCCACACTATGAGCCTTATCTCCTACACTAATAATTATAACGATACTAGCCCTCCTATCACTAGGAGGACTCCCACCATTGACAGGATTTATTCCAAAGTGACTTGTCTTACAAGAACTAACAACACAAAACATAACTATAATAGCCACTATCATAGCACTATCAGCC---CTCCTTAGCCTCTTCTTCTACTTACGCCTAACATACATTATAACCCTAACCACCCCACCAAACACAACAACATTCAAGCACAAATGACGATTTAATTACACAAATAATACTAATCCACTGTCTATCACTCTAACCATGTCAATTCTACTACTGCCAATTACACCTTTAATTCTGATA------------T-----AGGGACTTAGGATAATATTA-----AACCAAGGGCCTTCAAAGCCCAAAAC-AGGAGTGAAACC-CCCCTAGCCCCTGA---------TAAGACTTGTGATATTCTAA-AACACATCTTCTGAATGCAACTCAAACACTTTAATT-AAGCTAAAGCCTC--------CAGAATAGGTGGGCCTCGATCCCACAACAC--ACTAGTTAACAGCTAATT-ATCCAATCCAGC-GGACTTCTACTCAGCTT-CTCCCGTCTGGGAAAA--ACGGGAG------AAGCCCCGGAGCCTTAAAG-----GGCTCATCC--TTAAACTTGCATTTTAATGTGTTGCTTACACTACGGGGCTT------------GGTGAAGAGAGGAATTAAA-CCTCCATGA-ATAGGTCTACAGCCTACCGTCTAAACACT-CGACCACTTTACCTGTGTTC---ATTACCCGTTGACTATTTTCAACC   [1739]
Iguaninae             CAATTTCTGCCCCTCACACTAGCCCTATGCCTATGACACATCTCACTCCCAACCTCAACATTCGCACTACCCCCAATTAAC---------TAGCTCAAAA-------------GGAAATGTGCCCGAGCATC---AAGGATTACTTTGATAGAGTAAATTACAGAGGTTTAAATCCTCTCATTTCC----------TAGAAGAACAGGACTTGAACCTGCACCT--AAAGACTCAAAATCTCCAGCACTTCATT---ATACTATCTTCT---------------AGTAAAGTCAGCTAACCCA--AGCTATCGGGCCCATACCCCGAAAATGTTGGTTTAAAT---CCTTCCTCTACTA----ATGAGCCCTACCACAACATCCCTACTTCTCTCAAGCCTTGCAATAGGCACCATCATCACCGCATCCAGCCACCACTGAATGATAGCTTGAATTGGCCTAGAAATAAATACCCTGGCCATCATTCCAATTATCTCAAAACAACACCACCCCCGAGCCACAGAAGCTGCAACCAAATACTTCCTAACACAAGCAGCCGCGTCCGCCATACTCCTATTCTCCAGCACAATAAACGCATGACAAACTGGAACATGAGACATCACACAACTCACAAACCCCATAGCCACCATCCTACTCACAATGGCCCTAGCCACCAAACTAGGCTTGGCTCCAATGCACTTCTGACTTCCAGAAGTCCTCCAAGGCTCAACAATAAAAACAGCCCTCATCATCACCACATGACAAAAACTTGCCCCTATGGCACTAATCTACCTAACAGCCAACAACCTATCTACCCCCACCCTCCTAACAATAGCCATCCTATCCACCCTACTAGGTGGCTGAGGTGGACTAAACCAAACCCAAACCCGAAAAATCATAGCATACTCATCAATCGCCCACCTAGGCTGAATAGCAGCAATCACCCCCATATTAACAAACATCCTAACTCTAAACCTAATCATCTACCTAATCATAACAACAGCAATATTCTACATACTCATTCTCTCAAAAACAAAAACCATCCAAGACACCACAACAATCTGAACATCCTCCCCCACACTAACCATCATAATAATACTGACACTACTATCGCTAGGAGGCCTTCCCCCCCTAACTGGGTTTATACCAAAATGACTCATCTTAGAAGAACTAGTCATACAAAACCTAACCACAATAGCAACCATACTCGCCCTCTCCGCA---CTACTGAGCCTATTCTTCTACCTACGACTAACTTACACAACCACAATAACACTAGCCCCCACCACAACAACCACCCACCATAAATGACGATTCAAACCCACCTCCACCACAACCCTACTAACCACCACCCTACCCCTCACACTAATAATACTACCCATAACCCCCATAACACTTCTA------------TAAT--AGAAGCTTAGGATAAACCA------AACCAAGGACCTTCAAAGTCCAAAAT-AGGAGTGAAACC-CCCCTAGCTTCTGC---------CAAGACCTGCGAAACATTAA-AACGCATCTTCTGAATGCAACTCAGACACTTTAATT-AAGCTAAGGCCTCC-------CTAGACAGGCGGGCCTCGATCCCACAAAAA--ATTAGTTAACAGCTAAAC-GCCCCAGCCAGC-GGGCTTCTGTCCG-CTT-CTCCCGTCTTTTATTG--ACGGGAG------AAGCCCCGGAGCCTTTAG------GGCTCTTCT--TCAAACTTGCATTTTGACGTGTC----ACACCCCAGGGCTAT-----------GGTAAAAAAAGGAATTAAA-CCTTCCTGA-ATAGGACTACAGCCTACCACCTAAACGCT-CGGCCATTTTACCTGTGTCA---ATCACCCGTTGATTCTTCTCAACC   [1744]
Polyglyphanodon       ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [0]
Macrocephalosaurus    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [0]
Sineoamphisbaena      ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [0]
Aigialosauridae       ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [0]
Mosasauridae          ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [0]
Dolichosauridae       ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [0]
Adriosaurus           ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [0]
Pachyrhachis          ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [0]
Haasiophis            ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------   [0]

[Nuclear Alignments as used by Vidal and Hedges, C. R. Biologies 2005]

[c-mos 2143-2502= 360]
Sphenodontida     		TGTAGCAAGAACCGGCTGGCATCTC?GCAAAGCTTCTGGGCAGAGCTGAATGTGGCTCGTCTATGCCATGAGAATGTGGTGCGTGTTGTAGCTGCCAGTACATGTGCCCCTTCCAGCCAGGATAGTCTGGGCACCATCATCATGGAGTATGCAGGCAATACCACCCTACATCATGTCATTTATGGGACTGGCTGTGCACAGGGAATAGGAGAGGATGGTAGAGCTGGATGTGGGGGCGAGCCATTGAGCATAGTCCAGTCCCTCACCTATTCCTGTGACATTGTGACTGGCTTAGTTTTCCTTCATTCACAATGCATTGTGCACCTGGACTTGAAGCCAGCTAACATATTCATCACTGAG   [360]
Dibamidae         		..C..T.......A...A.....AAGA..G..T..T....G............T..A.....TG.T...A.C..............A........T..C........T...------.....C...G.T..T..T..T..A.....A....T...T..C.G...TT.G..C.....T..........G..AT..CATGAG..C..A....A..A.G.A.GAGTT.....A.A.CCAAC..T.C.........ACT..A..G..A.G...C..A.CA..T......G.A.....G..C..T..C........T.TT.....C..T.....T..A..A..T.....T..............A   [354]
Gekkoninae        		..C..T......A.TT.A.....A.G...G..............A..A.....A..A.AC..TGAT...C.A..............AA.......T..C.....CT.....G.TG.G.........T....G.....A..A.....A....T...T..C.G...T..G........T..C.........AA...G.T.ACA.C..A.A.GA......A.G.CCT.........CC.A...T.C..A..TT...CT..A..T..GCA...C......A......C.G.A..TC....C..T..A........G.TA.........T....T..A..A..T...........T........A   [360]
Pygopodinae       		????.T......A.TT.A.....A.G...G..............AT.A........A..G..TGAT...A.A..C...........A........T..C.....GT.....G.T..T.....C...T....G..T..A..A.....A....TC..T....G...TT.G..C.....T..C..........A.....T.ACA.CT.A...GA......A.G.TCT....G....CC.A...T.C..A.....GCCT.....T..G.G...................G.A.......CC..T..C.....C....TA..............T..A..A..T..C..............C..A   [360]
Xantusiidae       		..C..T........C........A.GA..G..T...........A..A..........T...TAC......C..............AA.......T...............G.T..T..AA.C...T....T........A..........TT..T.G.GG...T..G...G...CT..C........CA..A..ATGATA.C..A.A..AG.....A.G.GCT...C.....CCAA...T.T.........ACT.....T..T.AG..C..G..........G.G.A.....G..C..T..C........G.TG........T.....T..A..A..T..C..TG....T........A   [360]
Cordylidae        		..C..T.......AT........A.G...G..............A..A........G..C..TG.....A.C..............AA.......T...............G....T.........T.A..T........A.....A....T.......GGT..T..G..CA.C..T..C............A....GGTAAC..A.AAGA.A..CAA.GAGTT.........TCAT...T.TC.........CT.....TT.G.GT.....A.....TG.....G.A......A....T..C........G.TA.........T....T..A..A..T..C...............A.A   [360]
Scincidae         		?.C..T........TT.......G.GA.................A..A........A..C..TAAT...A.C........A.....AA.......T...G.....T.T...G...AT.....C...T....T........A.....A....T...T..C.G...TT.G..C.....T..C...........AA..ATGATAAC..A.A.GA......A.G.GCT...T.....CT.T..A..T.....T...ACA..A..T..G.G...C..G...A........G.A.....G..C..T..C..........TA........T.....T..A..A..T..C.................A   [360]
Teiidae           		..............T........A.G..................A..A.....A..AT.C..TGA...CC.C.....T........GA.T.....T..........TT...C....T.....A...G.......A..A........A....T...G....GT..T..G..C...A.T..C..........AA....TGA.AAC..A...GA...G.AA.------------..ACAT.TCAAT....A.T..A.G..A.GT..GGG...C...............T.A...........T..A.....T..GATG..A..C........T..A..A..T..C.................A   [348]
Lacertidae        		..C..T........TT.......A.G...G..............A..A....CA..A..C..TGAT..CA.A............A.A........T..C............GG..AT..A......T..........A..A.....A....T...A....G...T..GG.C.....T..C...............AT.GCA.CT.A.A.GA.A....A.---------------------.AGC....T....CT....GT..GGG...C............A..G.A........G..T..C........T.TG........T.....T.....A..T..C.................A   [339]
Rhineuridae       		..C..T........TT.......A.G...G..............A..A........AT.C..TGA....A.C........A..............T..C...GC.......G...AT.........T....T.....A..A.....A....T...T....G...T..G..C...A.T..C.....C......A..ATGACA.C..A.A.GA.A....A.---------------------GAGC....T....CT.G..GT..GGG...C......A........G.A.......CA..T..C........G.TG.....T..T.....T..A..A..T..C..............C..A   [339]
Bipedidae         		..C..T........T........A.G...G..T...........AT.A....CA..A..C..TGA....AGC........A.A...AA.......A......A........G...AT.........T..........A..A.....A....T.A.T..C.A...T..G........T..C.....A.......CAATGACA.C..A..AGAGA...AAG------------------------C.A..T....CT.T...T..GGG...C.....CA........G.A........G..T..C........G.TG........T.....T..A..A..T..C......C..........A   [336]
Amphisbaenidae    		..C..T......TCT..T.....A.G...G..T...........A..A....CA..A..C..TGA....AGC..C.....A.A.A.AA.......A......A...T....G.T.AT.........T..........A..A.....A....T.A.T..C.G...T..G..C.....T..C.............C.ATGGCA.C..A..AGAGA..GAAG------------------------C....T....CT.GA..T..GGG...C.....CA........GGA.......CG..T..C........G.TG........T.....T..A..A..T..C.................C   [336]
Trogonophidae     		..C..T.....TT.T........A.G...G..T...........A..A....CA..A..C..TGA....AGC........A.....AA.......A......A...TT...G...AT.........T..........A..A.....A....T...T..C.G...T..G..C.....T..C.............C.ATGGCA.C..A..AGACA..AAAG------------------------C....T....CT..A..T..GGG...C.....CA........G.A........G..T..C........GCTG........T.....T..A..A..T..C.................A   [336]
Helodermatidae    		..C..T.....T..TT.......AAG...G..............A..A........A..C..TGA....A.C..........A...A...........C........T...G...AT.........T..........A..A.....A....T...G..C.G...T..G.....G..T..C.....A......AA.ATGGCA.C..A.A.GA......A.G.TTT.........CCAT.C.TGT..........CT..TG.T..GGG...C..TC...........G.A........C..T..C........G.TG........T.....T..A..A..T.................A..A   [360]
Anguidae          		..C..T.....T.ATT.......AAGA..G..............A...........A..C..TGA...C.TC..........A...AA..........C............G...AT....................A..A.....A....T.A.T..C.G...T..G..C.....T..C....A.......A..ATGACAAC..A.A.G---....A.G.TTT.........CTAT.T.TAT.....T.C..CT...G.T..G.G...C...............G.A......A.C.....C........G.TG.....T........T..A..A..T.................A..A   [357]
Varanidae         		..C..T.....T..CT.......AAG...G..............A..A......ATG.AC..TGA....A.C........A...A.A..T........C............G...AT.........T..........A..A.....A....T...T..C.GA..TT.G........T..C............AA.ATGACA.C..A.A.TA......A.G.GC.....GA...CCAT.T.TGT.......C.ACT.T.G.T..GGG....G..........CA..G.A..A.....C.....C........C.TG........T.....T..A..A..T.................A..A   [360]
Serpentes         		..C..T.......ATT.......A.GA..G..............A..A.....A..A.....TG.....A.C..C.....A..CA.A........T...G.....A.....G.T..T.........T..........A..T.....A....T...T...TG...T.....C........C.....T.....T.A.TTCACA...---CAGA..A...A.G.GCT.AA.....ACCAT.G.TTTC....T.C..CT...G.TG...GT..C........T......G.A..G...A.G..T..C........G.TA........T.....T..A..A..T........C........A..A   [357]
Leiocephalus      		..C..T......A.TT.......A.GA..G..T...........AT.A........C.A...TGA....A.C........A.....A........A...............G....T.........T.......T..A..A.....A....T...T....G...T..G..C.....T..C..........A...CAAGACA.C..AGA.GA..A...A.G.GCG..T......CCATAT.T.T.........ACTG.AG.AT.AGG.................CA..A..TC...CC.....C........T.TG........TT....T..A..A..T..C..TG..........A..A   [360]
Iguaninae         		..C..T......A.T........A.G...G..T...........AT.A..C.....A.A...TGAA...A.A........A.....AA.......T..C............G....T.........T..........T..A.....A....T...T..C.A...T..G..C..CA.T..C..........AG..CAAGACA.C..AGAAGA......A.G.GCT.....A...CC.T.C.T.T.........ACTG..G.AT.AGGT................CAG.A..TC....C.....C........T.TG.........T....T..A..A..T.....TG..........A..A   [360]
Polyglyphanodon   		????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Macrocephalosaurus  	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Sineoamphisbaena       	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Aigialosauridae       	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Mosasauridae          	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Dolichosauridae        	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Adriosaurus            	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Pachyrhachis           	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Haasiophis             	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????

[rag-1 2503-5364= 2862]
Sphenodontida     		AAAGTGAGATCATTTGAAAAGGCACCTCCTGAAGACAGCTGCCCAAAAATCAATGAGAAAGCAGAAGAGGTGGTCTCTTTGGGCAAAGCCATTGTGATGCAAGAAGATACAGCAATTTCAACATCC---AAAAAGCCATGTCTGATGCACAGAGAATTAAGGAGTGATATGCAGACAGTTGGAAAAGATGCCAACAATCTGAAATCAAAGGAGAATGCAGCTCATCAAGCAAAACTGCAGCAGCTTTGCCGTATTTGTGGGGTTTCATTTAAAACTGACCGATACAAGAGAAGTCATCCAGTGCATGGGCCAGTGGACAATGAAACCCAGGCACTTCTAAGAAAGAAAGAGAAAAGAGTGACATCTTGGCCAGAACTTATTGCCAAGGTTTTTAAGACTGACGTGAGAGGAGATATTGACACAATTCATCCTACCCATTTTTGCCATAACTGCTGGAGCATCATCCACAGAAAGTTCAGTAATGCCCCATGTGAAGTGTATTTCCCAAGGAACAGCACCATGAAGTGGCAGCCTCACTCATTGAACTGTGAGGTTTGTGGCACTGCTCATCGTGGGGTCAAGAGAAAGAAGCAACCACTGAACCTGCCATTGGGCAAGAGACTCAAGGTCACTGCA---------CAAAAAATCAAGGGCATGAAGAACCGAGCACTGATGAAGAATAAAAACCTCATGAAAAGGATTGCTAACTGCAAGAATATACACCTCAGTACCAAGATTCTTGCAGTAGACTATCCTGCAAATTTTGTGAAGTCCATCTCTTGCCAGGTTTGTGAGCATATTCTGGCTGACCCAGTGGAAACAACATGCAAGCATTTATTCTGCAGAACCTGTATTCTTAAATGCCTCAAAGTTATGGGCAGCTATTGCCCCTCCTGTCGATATCCTTGCTTCCCTACTGATCTGGAGAGCCCAGTAAAGTCCTTCCTGAACATCCTTAATTCTCTGGCTGTGAGATGCCCAATGAAAGAATGTGATGAAGAGGTTCCATTGGGTAAATATGGCCGTCACATCTCCAGTCACAAGGAGGCGAAAGAGAAAGAGGCTTATGCACACATAAATAAAGGTGGCCGACCAAGACAACACCTACTGTCGTTGACCAGGAGAGCTCAAAAGCACCGCCTGAGAGAGCTTAAGCTTCAAGTCAAAGCTTTTGCCGAGAAAGAAGAAGGAGGAGATGTAAAGTCTGTGTGCCTGACTTTGTTTTTGCTGGCTTTAAGAGCCAGAAATGAACACAGACAAGCTGATGAGCTGGAAGCTATCATGCAAGGGAAAGGATCAGGGCTTCATCCAGCTGTTTGTTTGGCAATCCGAGTCAACACCTTTCTAAGCTGCAGCCAGTACCATAAAATGTACAGGACTGTAAAAGCCATAACAGGGAGGCAAATCTTCCAGCCACTGCATGCTCTCCGAACTGCTGAGAAAGCCCTTCTGCCAGGATACCATCCATTTGAGTGGACACCTCCTCTGAAAAATGTATCCACTAATACAGAAGTAGGCATTATGGATGGGCTCTCAGGGCTACCACTCTCAGTTGATGACTACCCAGTAACCACAATTGCAAAGAGATTTCGTTATGATTCAGCCTTGGTTTCAGCACTAATGGATATGGAAGAAGACATCCTGGAAGGAATGAAATCTCAAGACCTGGATGACTACCTGAATGGCCCCTTCACTGTGGTGGTAAAGGAGTCTTGTGATGGTATGGGAGATGTCAGTGAGAAGCATGGATGTGGACCAGCTGTCCCAGAGAAGGCAGTTCGATTCTCTTTTACACTCATGACTATCACTATAGCTCATGACAATAAAAATGTAAGGATCTTTGAAGAAGCCAAACCCAACTCAGAATTATGTTGCAAACCTTTGTGCCTTATGCTGGCGGATGAATCAGATCATGAGACTCTGACAGCCATCCTGAGTCCTCTCATAGCAGAAAGAGAAGCCATGAAAAGCAGTGTGCTTATGCTTGAGATGGGAGGAATTCTTAGAGCATTCAAATTCATCTTCAGGGGCACAGGATATGATGAGAAACTTGTCCGTGAAGTCGAGGGCCTTGAAGCTTCAGGTTCTACTTACATCTGCACCCTTTGTGATGCAACCCGCTTGGAAGCCTCCCAGAATGTGGTCTTCCACTCCATCACCAGGAGCCACACTGAAAACCTGGAGCGGTACGAAGTGTGGCGGTCCAATCCATACCACGAGTCAGTTGAGGAGCTACGCGACAGAGTGAAGGGTGTTTCTGCAAAACCTTTCATTGAGACTGTTCCTTCGATAGATGCACTGCACTGTGACATTGGCAATGCAGCGGAGTTCTACAAGATATTCCAGTTTGAGATCGGTGAGGCATACAAAAACCCTAATGCACTGAAAGAAGAGAGGAAAAGGTGGCAGTCAACTCTTGACAAGCATCTCAGAAAGAAAATGAACTTGAAACCAATAATGAGGATGAATGGAAACTTTGCTAGAAAGCTCATGACCAAAGAAACAGTGGAAGCAGTATGTGAATTAATAAAAAGTGAGGAAAGACATGAAGCCCTAAGAGAACTAATGGACCTTTACCTTAAGATGAAACCAGTGTGGCGGTCTTCATGCCCAGCCAAAGAATGTCCAGAACTGCTATGCCAGTATAGTTTCAACTCACAACGTTTCGCTGAGCTGTTGTCCACAAAATTCAAGTACAGATATGAGGGCAAGATTACAAACTACTTTCACAAAACTCTTGCTCATGTCCCTGAAATCATTGAAAGAGATGGCTCCATTGGTGCCTGGGCAAGTGAAGGGAATGAGTCTGGGAACAAATTGTTTAGGCG----------------------------   [2822]
Dibamidae         		............C........T...T.........TGA.------------------....AG...A...CA.C....C...AA....T..C....GAC..GACC...C...TGGC..T..TG..A---C..G....C.T..A.GCAG...T......G.AC....G........T.AGA.ATC.......TTTTC..G....CCAG..A....G..GG.....C........T........C..C........C.....A.GC..C.....G.....T.CT.CT..A........C.................A..TG.C.....A..A..CA....G..............G..G.CT..T...........T...C..........C.......T...T...C.......C...........C.....C..TA.......T.....T..T...CATG.G.....G..G..A.....C........C..............T...C..C.AG........G.......T..C..T....CA.TG.....T..C.........T.CGCA.....CA............C....G.T.......CA...G..A....A.A.......A...T....GGTCATGCAAG....CGA.T.C.AGCA.G..G..CTAA..GAG..GCC.GC...GG...........A......C..T..............T......G.......C.....................G.C.....C.....A.............CC.....A..C..CT.............A.....G...........C.....T...C..GTG..C..........................A..T........A........C...........T.............T......T..G..A..T.......G......C..CAG.T.......A.....T...G.......C...A....G..CA.C.TTC....A.....CT...C...TC.T.....C.....A.....AC....C...A....A....TG..T.....C........................T.G..T..A......C..........G...........C.....A..C...........A...........T..............G...........A........T..T........CC.T......C.G.....T..............G.....C......T..........A........A..G.....G..C.................C.........A.......T........C.....T.......................A...........G........A.....G..T.........T.......A.................GT.T..C........T..T................A...A..CT..........G....G..C..................A.....A........C..T.A..AT.TG..C...............GA............AC.......A......G....A...........C..T....................AA.T.....GC..........GA..........T..T.....A.....T....TC........T..A..A..C........A.................A..............C...C.......T.....A........C........C..........AC......G.........G....GCTC..A...A.G.T.........AG...G.....T.....GC.G.................T...........T...........C........A..C....T.........C.....TG..A.....................A...CACAT.GC.A.....T.....T.....C.CC....................T........T..G........A..G...........CA.A.....T........G........C...........T..T...........C..A..............T.....CT.....C.T........A..A.....T..TG...................T.........A.A........C..T..T...A.C..A..T..A.....T.......................C..G.....T...........G...............T..........T..............T.....T.................G.....T.......T........C.G..G......CA...........A..G........AA.T..C........A..C...C.............TC.A..G..C...GGA..............T..............T...........G..............T.....GC....C..GT.............CA...TT..C..G.....C.....T.....T.....A...........A........C.....T..CA....G.....C.........T..........C..C........T..GA.C.....AA..T..........C.......GT..TC.C....................T.....C........C.....C.....T..C.....T..A.......................T.....C...........................C....C.....CTTTC-----------------------   [2818]
Gekkoninae        		...........TC........T...T.........G...CAT.TGGCT.A.C....T..C.GGA..AT.CCA.CT.T..C..A.....T..A.------------...G..ATG.C..T..TGC.G---C..G......T..AT.GAGGACA.A.TC.G.AC.ACAGC........GA.A.CT.........TTTTC.GAA..CCA..GA..A.T..A...A..C.G..T...CT.......C..C..T..C..A.....T.G...........A...T.CT..T........C..C.....A..............TG......TG..T..C.....G...........A.G...G.CC..T...........T..AC..AA..............T...T...........C..G........C........TA.......T..C...........TG.T.....G..G........C.G..T..................T........AG....T...G.......T..C..T...ACC.GA.....T............T.CTCC.....AA.A...............G.C.CA.GT.CA.AGGG...G..A.AG....G.A...T...TGAACGTGCTAG...G..A.T.TATGCA.GA.G..A.AAG.AAG....CGGC....G.A.........A....A.C........A..G..C..T........A.....G..CA...............TGG.......A........A.........A.C..........................A.................C............CAT..C..C........T........A..A..A...........A........C........T..T.............T......T..G.GA..........G...A..C..CA..T.........TG..T...G.......C...C.G........CA.TC.T..A.....CA...A....C.T..TC.C.........AAA..G..C....GAA...T..TGT.TG....C.................G......T....C..AC.....C..C....C.....A..T.....A.....A..C...........A...........T..............T........G...........T..A.....A...C........C.G.....T...........................T..........G...........G........A..........................T.....G.....T.....C.....T...........................A.......G........A.....G..T................................A..GT.............T..T...........A....A...A..CT..........G..TT...TC.................A.....A..T.....C....A..AG.TG..................GA...C.....T..A........A......G.T........G..T..CT.G.......................T......C..........T..T...A....T..TT....A..A..T............A.C..A..A..C........A.................A........C.....C..G........T..A..A........G..T.....C...G......AC......G.G..A.........G...G.A....A..T.........A....G.....T.....G..G...........C..A...........T..T...........C........AT.C..T..T..............TG.............G........G.A.....AA..GG.A.....T.....T.....C.CA...AAC.....T........T.....T..T...........A.....C...........A....................C.....A..T..T..T.....C...........T..............T.....CT.....C.G........A..A..A..T..TG.C..............T..T.........A.......C..C..T..T..AA.T.....T..A.....T........A..............C..G.....T..C..............AG........T......................T..T..A..T..T........T...C.......T.......T.........TT.........CA..............G..A...........G........A..C..G...............C....G..TG...C...............T.....A............T.A.....G.....A.....C..T......C.C.....G........CC.C........A..T........C.............................A.....A........T..CAG...G..G...........A...........C..C........T........T..A...T..............................CA........A.....T.....C....................G..A..G..T..A...........T..T........T..............A...........A......C....C.....TTTTC-----------------------   [2824]
Pygopodinae       		---------------------------------------------------------------------------.TCC.A.A.....T..A..A..AC..T.CT...G..ATGGC..TG.TG------C..G.A..C.T..A..CAGGA.A.A....G.AC.A..GC.CA.....TA.A.AT........TTTTTG.GCA..TCA..GA..A.T..A...A..C....T...C...........C..T..C..A..C..A.GA..........A...T.CT..T........C..C.....A.....A........TG.......A...........G..G..A.....A.G.....CC..T..C........C..AC...T............A.T...T...........C...........C........TA.......T..C.....TC...AAG.T..T..G..G........C.G..T...T..............T.....A..GG....T...G.......C..A..T...GC..GT.....T........T...T.CTC......AA.G...........A...G.C..C..T.CC..GG..A....A.AG....G.....T....GAACATGCTAGG..G..A.T.TA..CA.GA.G..AGAAG.CAG....C.GC....G...........A....A.C........A..G..T...........GG.T..G..CA.................G.......A..A..A............A.C...........C.....A..T.....A.....T...........C........T...CT...C..C.................AG.A...........T..A........C...........T............AT..AT.....G.GA........C..TG.GA.C..CA..T..........G......G.......C...C....G..C...G.TC....A.....CA...A...TC.T..T..C........TAAC..........G.A.C..C.TG..TG....C.................G......T....T..CC.....C.A..............T..G........A..C...........A.........T.T..............T........G........A..T..A..C..A...C....T..CC.G.....T...........T..............AT..........G..............G.....A..GAG............C........T.....A.....T.....C.....T..T.................T......A.......A........A.....G..T.........T......................A..GT.....T.......T..T...........A....A...C..CT..........G....G...C.................A.....A..T.....C....AGAAT.TG..................GA...C........AC.......A........C........G..T..CT.G.......................T......C.T.....A..T..T..A.....T..TT....A..A..A............A.C..A.....C........A...........G.....A........C.....C.....G.....T..A..A.................C..........AC..T...G.G.......G....G.............T.........AAT.....T..T.....GC.G.....T.....C..............T..T...........C........CT.C..T..T..............GG.............G..........A.....AA..GG.A.....T.....T..T..C.CA...AAC.......................C...........A..G..............A....................C.....A..T..T..T..A..C...........T...........T........CT..A....G........A..A..A..T...G.........A.........T.........A.......C..T..T.....AA.T.....T..A.....T........A..............C..G.....T..C........G.....AG........T......................T..T..A..T...........T...........T..C....T.........T..AG.....TCA...........A..G..A...........A........A..C.....G......G..........G..TG...CA..............T..........G...T...T.A....GG.....A.....T..T......C.CG.G...T.......G...TGC........C........C....C........................A.....A.....C.....CAG...G..G..C........A.....T.....C..C........TG.......T..A..A...C.A...................................A.....T.....C.....G..............G..A.....T..A...........T..T........T..............A...........A......C.A..C..A..TTTTC-----------------------   [2758]
Xantusiidae       		...........TC........C...T.......C....TCAT.TGGCT.A...C..T..T.TGA..ATA.CA.C....G...A.....T..C..A.GA..GGAG....G.T.TGGA..T..TG..A---C..G.T..CCT..AA.CAG.TCC......GCA..A.AC....AG....A.A.AC....G....TTTC..G....CCA..GA....C..A..T...C........T..T.....C..C..T..C..C.....A.GA..CC.......G...TCT..T.....G..C....................A..TG....G..A.TA..C...T.G.................G.CT.....C........T...C..................................C.........G.C.........A.......T..C.........GATT.T..T..A..G..A.CA..C.......................TT.......A.........G.......T..C..T....CA.G......T........T...T.G.CC........................G.C.....T.CA.AGG..A....A.AG....G.A.TGT...TGGACGTGTT.G.C....A...CATG.A.G..C.ACCAA..AAT...GC..C..G.GT..........A......C...........G.....T........G.....C.....................G.C..C..A..A..A.......................C..A.....A........A...........T.....C............GT...C..C..G..G.......GG..A.....A...........A........C...........T..A..C......A...AG..T..G..A..........G......C...AGCT...T.........T...G.......T...C....G..A..CTGTC....A.....CA....C..TC.T...........A.....A.....C.....A.G.....TG..TG....C...........G............T....T..A......C......................A.....A..C........G.....G..C.....T........G.....G....................T...........C..A........G.....T..............G.......................A...........G........A.................C.........A..........T.....C..T......................................A........AC....G..T.........T......................A.................C..............A....A...A..CT.......C..G....G...C..G........T..C..A.....A..A.....C....A..AT.TG..................GAT..C.....C.....G.....A......G....A....C...T..C..G...........G........AA.T.....GC..........G.G.T..........TG....A..T...............A.T..A.....C........A.................A........C.....G..CC.......T.....A.................C..........GC.....G.....C....G....G..G.GA...A.G.T.........AA...G.....T..T..GC.G....................C........T...........C........A..C..G...........C..A..TG.............G..T.....GGA.......T.GG.A.....T....CT.....C.CC...CT......G........T........T.....C........G..............G..A...........C.....C...T.......T..T..A..................C..........T.....CT..A..C.T.....TG....G..A.AT..TGTG........A........T..G..A...A....T..C..C.....T...A.......T..A.....T...C...................C..G.....T..........................T.......................CA.T.....T.......................T.....A.TG.......C...C....TGTCT...........A..G.......................A..C..T........G......C....G..TG.C.CA...........C..T.....G....................G....CA...C....C......C..........C.....G..............C.A...G..C...........T.................A........C.....T..CA....G..............AG.T........C..C........T........T..A...T..C.......C.......GT...........A..............T..........................T..A.....T..A.....G.....T...........T...........G..A...........A...........C.....CTTTCGAAAAATGAATGCCAGACAATCC   [2859]
Cordylidae        		---------------------------------C...A.CAT.TGGCT.A......T....GGA...T..CA.CTAT.C...A...TAT..C..A.GAAG..AC....G.T.TGGGG.T..TG..A---C..G.TTTC.TG.A..CAG...C..G...G.AC.ACAG....G.....A.G.AT.......T.TTTC..G....C.AT.GA......A..A....C........C..T.....C..C........C.....A.G.................CT..T........CT.C..............T.....TG....G..A.....C...T...................G.CT.....C........T...C........A.........T...T...........C...........C........T..A.....T..C...........AG.TG.T..G..G..A................C............T........AG........G.A.....T..C..T....CA.GT.....T............T.CTCC....................A...G.CT....T.CA.A.ACAA....A.AG..G.G.A...T...TGGACATGCT..GC....A.G.CATT.A.G.....CCAA..AAG..---..C....GT..........AA....T............G..T..T........A..TG.C.....................G.C.....A..A..A........T.....C........C..A.....G........A.................C........T...GT...C..CT..........T.G...C.....A...........AG.......C...........T...........CAT......C..G..A..........G......C..CAG.T.....A.A.....T...G.......C...C....G..A..CTTCC....A.....CA...A...TC.T.....C.....A....AA.....C.......G.....TG........C.......................TT....T..A.....TC......................A.....A..C...........A..GA....C..T..............G.....C....G.........T..A........C..AT.......G.....T...........................T..........A....................C....C............C..........................C.............................A..A........A........A.....G..T.........T.............G.G......A..G......T.......C.......T......A........A..CT.......C..G....G...C..T........T.....A.....A..A.....CA...A..A..TG..................GA...............G.....A.....CG....T........T..C....................T...T.......GC.C........T..T............A....A..................A.T..A..A..C........A.................A........C.....C........A..C.....A......A.......A.............GC......G.T.......G...AG...G.A...A...T.........AA...G.....T.....GC.G...........C.................T...........C........A..C........T.....C.....TG.............G...............TCAT.GG.A...........T..T..C.C....T................T.....A..T...........A..G..............A..............C.....C..CT.......A..T.................A..............A..A..CT..A..C.T...........A.....T..TG..........A........T.........A.......C..C.....T...A.T.....T..A.....T...C.......A...........T..G..C..T.................A.........T....T.................TA.T..A..T.....A.................T.....A.....T.........G....TTCA...........A..G........A...........T..A.....G........G.....TC....G..TG...CA..............T..................T.......G..............C......C.......GT.....A.............T..C.A......C...........T.................A.....T..C...A.T..TA....G.....C......T.AG.............C........T........T..A......C....T.....G....GT..T.......................T..........................T.AA.....T..A...........T........G..T..............A.....A.................C..A..CTTTCGAAAAATGAATGCCAGGCAATCC   [2823]
Scincidae         		...........GC.......AC...T.......CG....CATGTGGCT.A......T....GGA...T..C..A....C.A.A.....T.TC..A..AAG.G.....GG...TGGGC.T..GG..A---C..G.C..C.T..A.T.AG...C....C.G.AC.A.CG.G..G....GA.A.AT.........TTTCG.G...CCCA..GA.......A......C.......GG........C..C.....A..C.....A.G...G.............CT..T........C..C........C..A........T....TGGTG.....C..A..G..G..............G.CT..C...............C.CT...............T...T...........C.....T...G.C........TA.C.....T..C..........A.G.T..T..G..G..A.....C....T...C........A.....T........AG..C...G.G.......T..C..T....CA........T.....C......T.ATCCT.......................G.C.....T.CA...G..A....A.A.....G.A...T...GAGACATGCGAG.C....A.GACAAG.C.GA....CCAA..AA.....C.G..G..GT..T.......A.....TC...........G.....T........A....GC.....G..G..............C........A..GG.T.........A.C........C..C.....A........A.................CG.G..........TT..C..C...........T.....C.....A............AGT.....C...........T...........T........C.....A..T.......G......C..CAA.T...T.........T..TG.......C........G..AA.CT.TC...AA.....CT...A...TC.T.....C.....A..C..A.....C.......GC....TG........C........................T....T.........C......................A.....A..C...........G..G........T..............G......T.C...........T..A........CC.C......C.G.....T....................C.....A...........A........A..G...A....C.................C..........................C.....T..T........C...........A..G........A........A........T........TT......................A........C.....G..T..............A...CA...A..CT..........G....G...C..T..............A.....A........C....A..AT.TG..A........T......GA...G...........G.....G......G....T........T..C..C.................T...T.T.....GC..............T..........TG....A...........A......A.T..A.....C........A..............C..A........C.....T...........G.....A.....G...........C.....T....GC......G..............GG..G.A.C.A...T.........AA...G.....T......C.G....................G........T...........C........C..C.....T..TT....C.....TG....T.....G..G................AAT.G..A...........T.....A.CC....T..........G.A..T........T.....C.....A..G..............A..............C.....C...........A..T..A..............A...C.............A..CC.....C.T........A..G....AT..TG........T.A........T..GA................C.....T...A.T.....C..A.....T.......................C..G.....T..C..A...........A........GT.............A........TA.T.....T........C.....A..C.....T.....A.TG..........A.G.....TCA.........C.A..G........A....TA........A.....T........G....G.C....G..T....CAC.............T...................G......G..T........G..T.....GC....T..GT....A.................C........C...........T..............C........A..C.....T..CATT........C........AG..........C...........T.....G..T..A...T..C..........G....GT.......................G..T...........G..............T..G.....T..A.......................T.....G........A.....A.................C.....CTTTC-----------------------   [2836]
Teiidae           		...A.C.....TC.GA.....T...T.T.G.....G..TCATGTGGCTGA..G...C....AGA...T..CAAC....G...A.....G.....CAGA.A.G.TT...G.TCACCC.....TG.TA---C.GG.T..C.TGAGA.AAG...CT....CC.AC.TCAGGG.....G..AGAA.C...C...A.TTTC.GGA..CCCA..GA....TA.AGT......G...............TT.C.....C..........AA..G...........T.CTGGT........CT.C.....T.....T..T..A..TG....G.TG.....C.....G.A......G.....G....CT.....C.......G....C....T.............T...T.......A...C..A........C.........A.......T..C.....T....ATGCT.....A.AG..A.....C....G...G.A....TCA.G...T....A...AG.T......G.....TGT..C..T....CA.G...CAGTA.....AC.C..T.CTTC.A......................G.T.....TGCA.AG...AA...A..GGC....A.TGG.A.TGGGTGTGCTAG....G.G.GTC.TG...GC..T.CGAA..AA........C..G.G.T.A.......A......A...........G.....T...GAC....GTG.C...........T.......TGG.C...........A.....G.....AA.C.....A.....C..A...........C..G..T...........CC.C..T.....GGTT..C..C........T........A.....A..T........A........T...........T...........A.T.........G...........C.G......C..CAG.T.........C...T...G.......T...C.A..G..A..CT.TC....C.....CT.T.AC..TC.T.....C.....A..T.TA.....AC......G.....TGT..G....C.....G..G...........G...T....T..AC....T..AC.G..C..G...........A.....C..G...........G...........T..A...........G..G.....G.....C........A........CC..T.....C.G.....T...........................T..........A........T.....G.....A....C.............C......................C..T...........A..............T..............AG.......A..A..G..T........C.......................A..GT....C........C.T............A....A...A..CT..........G....GC...........G.....C..A........T.....CA...A..AT.TG..................GAT..G..A..C........C..A......G.C...........T..C..............G.................GC.....A....T..TT..........TT....A..T........A......A.C..A..............G........C........A........C.....C........T..T..A..A.....C..C........C...T.T....GC..TGT.G.G.A.A..A....C....G...T.....A.........AG...G.....T......C.G.....T.......................T...........C..C.....A..C..............C.....TG........C....G........G.AT..C..AT.A..A.........A.T..G....CC...ATG........TG.......A..T..T..............G..............A..A.....C...........C....A...T..T.....A..............A...C.......A..T.....CT..A..C.T..T.....A..A.....T..TG..........T........T.....A...A.A..T.....T.....T..AA.T.....T..A.....G..TC.T.................C..G..A..T.................A.........T.............A...........T.....T..T........T...........T.....A.TG........AAG.G....TTCA.........C.A..G........A...........T.....C...........G......C....G..C..G.CA..A...........T........G..A...............G.T...........C.............GCT....A......A.AC....T..T........C.....A.......................A.....T........T..CA...TG..............TG.G...........C.....T..T..G.....T..A...T..C.......T.......GT........C..A..............T........T.................T..A.....T..A...........T...........T..............A..................C....C.....CTTTCGGAAAATGAATGCCAGACAGTCA   [2859]
Lacertidae        		...............AGC..AC.G.T..T.........TCA..TGGCTCA..G...T....G.A......CA.C....C.......T.T..C..A.GA...G.CT...GTGATC.C....GTG..A---C..G.A..T.C.GAA.CAGT..CG...G.C.AC..CAG.G.....G..AGA.AT...A.....TTTCC.G....CCA..G.....T..A.A....C...AGC..G........C.....T..C..C.....A.GC........G.......CT.G.........C..C.....C..............TG....G.TG..A..C.....G........G........G.C......C........T...C....T..A.....C....TA...........T..C...........C........TA..........C..........ATG.TG.T..A..G..A.....C...T.T..........A......T........TG........G.A.....T..C..T....CA.G...C.....G.........T.CTTC...........A............G.C.....T.CA.AGA..A....A.AG....G.A....A..TGGACGTGCTAG......A.G.C....A.G...TAA.A.G.GAG....C..C..C.CTT.A.......A......C........C..G...................GC.....T.....T.....CATTG.C.....A..A..G..............C...........C........T.....A.....G..G..TCG...C...........GGT...C..C..G..............GC....A..T........A........C..C........T..G..A.......TA.....T..T..A......T...GT.....C..CAG.T.............T...G......GG...C.C..G.....C.TCC....A.....CT...AC..TC.T....TC.....A....TAG....C.......GC....TGT.TG....C...........G...........TT....T..A......C.......A..............A.....A..C..A........G...........T..............G....................T..A........CC.A......C.G.....G........G..T........C......T..........G...........G........C.....C...........C........T..G..............C.....T.....A.................A...........A........A.....G..A..T..............C..............A..GT.T..C..C.....T...................AG..A..CT..........G....G...C...........A.....T........G.....CA...AG.GT.TG.................GGA.........C...........A......G....T........T..C..G.....................A.......GC.....A..A.G...T..........TT....A...........A......A.T..A.....C........A.................A........C.....C...T.A.....T.....A.................C..........GC......G..........G..GGG..GCTCC.AT............AG...G.....T......C.G....................C........T..C.................A..C.....T..A.....C.....TG.G...........G..........AT.....AT.G..A..........CT..G..C.CC...ATG........TG....TC.......T...........A..G..............A.................T..C...........T.....G........C.....A...CA......A.AT.....CT..A..C....T.....A..G..A..T..T...........A.....A..T..G......A.A..A..C..C.T...T...A.G.....A..A.....T.......................C..G.....T...........C...............T..........T........C.....C.....T.....A...........C.....T..C..A.T......G......G.CA.GTCC...........A..G........A...........T....TC..T.................A..G..C..G.CC..............T.....A....................G..............T..............GT...GC..G.....G........C........C.......................G.....A........C.....T..CA....G.....C........TG.T........C..C...C.T..T...........A...T..C.......T.......GT..............A.G...C.....T........T.....G...........T........T..C.......................T...........G..C.....A...........G..A..C.....CTTTCGAAAAATGAATGCCAGGCA----   [2855]
Rhineuridae       		............CC.A.T...CT..T......T.....TCAT.TGGCT.A......C....GCA......CA.CT...C...A...T.T..CA.AAGAA..G.CT...GTGA...C..T.TTG..A---C..G..T.C.TAGGA.CAG...CT.....C.AC.A.AGC.........AGA.AT...A...T.TTTTG.G....CCA..GA....C..A......C.................C..C..T...G.C.....A.GC........G.......CT...........C..C.....T..............TG....G..A..A..C.......................G.CC.....C........T...C....T.............TA..A...........C...........C........TA..........C..........ATG.T..T..A.....A.....C.....T....A...T........T........TG........G.......T..C..T....CA.G...................T..TTC.A.........A............G.C.....T.CA.AGC..A....A.AGA.....A..GT...TGGACATACTAG......A.G.CATG.A.G...TAC.AA..AAG..---C.C..G.GTT.A.......A......C........C..G.....T............G.C...................TGG.......A.....AT..........A..C.....T.....C........T.....A........T..T.....C............GT...C..C...............A.A.....A..T........A.....C..C.....A.....T..A......T...T......T..G..A.....T....G......C..CAG.T..........G..T..TG.A.....T...C....G.....C.TTC....A.....CT...AC..TC.T....TC.....A.....C....CC.......GC..C.TGT.......C...........T............T....T..A......C.......A........T.....A.....A..C...T...................T..............G...........A........T..A..A.....CC.A......C.G.....T..............G............T..........G...........G........C........GT.......C........T.................T.....T.....A.............................G........A..A..G..T..T......T................A.....A...T....C..C.....T...................A...A..CT..........G....G...C.................A..............CA...AG.AG..G..............G...GA.........G..A........A......G....T........T..C..........................T.....GC.....A.....A..T..........TT....A.....T.....A......C.T..A.....C..C.....A.................A........C.....C...C.......T.....A..T..............C..........GC......G..............GG..G..C..A...T.........AAT..G.....T.....G..G........................T....T.....G.....C.....A..A..C........T.....C.....TG.G......................A......AT.G..A.....T.....T..G..C.CC...ATG........TG....TC.......T...........A..G..............A..............C.....C..C..............A..............T...C..........TG....CT..A..C..........A..A....AT..TG..........A.....C..T..G......A....G..C..C..T..T...A.T.....T........T.................A.....C..G.....T.................A.........T.........................T.....T.......................T.....A.T.........TT..G...T.TCC...........A..G..A.....A...........T..A..CA.T........G........A..G..T..G.CA........C.....T..........................G..T...........T..............GT....T..G.....G........T........C.............................A........A.....T..CA...................AG..........C..C........T........T..A......C...............GT..........G...A...........T........T.................T........T..A...........T...........T..............A...........A.....GC.A..C.....CTTTCGAAAAATGAATGCCAGGCAATCA   [2856]
Bipedidae         		............C..A.C..AC...T............TCAT.T.GCT.A..G...T....G.A.....ACA.C.AT.C...A..GG.GT.CCAG.GAA..G.CT...G..ATGGC..TCGTG..A---G..G....C.T.GAA..AG...CT.G...C.AC.ACAG..A.....A.AGA.A....A.....TTTCT.G...CCCA..GT..A.T..A......C...........T.....C..C........C.....A.GG........G.....A.T.A......T...C........T..............TG...TG..A..A.AC..C......................CC.....C.....T......C....T.............T...T.............................G..TA..........C.........GATG.T.....A..G..A.....CC..T....T..C.......C...T........TG..G.TG..G.......T..C..TA..C....T..................T.CTTC.A.........AC....A......G.C.......CA..GC..A....A..G....G.T.TGT....GGACATGCTAG......AGG.TTTG.A.G..GTAC.AA..AAG..---.GC..G.GTT.A.......A......CG.......C..A....................A.....C............CTGG.A.....A.....A..T...........C....................T..G..A.....G.....T.CA..C.....T......GTG..C..C........T........C.....A..T..C..............C.....G.....T........C....T......T..G..A..........G......C..CAG.T.............T...G.......T...C.G..G...A.C.TTC....G.....CT.T..C..TC.T....TC.....A....TA..G..C.......GC....TGT.TG.C..C...........G............T....T.........C.......A........T..T........A..C...........T...........T..............G..T...A.............T.........C.CC........C.GC....T........G..................T..........G...........G.....C..C.................C..A.....T........T........C.....T..T................................A........A..A..G..T..T......T.............T..A.....A..GT.............T......T............A...A..CT..........G....GC..C.................A.....A..G.....CA.C.AG.AT.TG.................G.A......A.....A........A......G....T........T..C..........................T.....GT.....A....G.G.T..........TT....A..G..T............A.T..A.....C..........................A........C.....C...........T.....A.................C..G.......GC......G.CA.......G...GG...CTC..A...T........GAAT..G.....T.....GC.G....................C........A....................A..C..............C.....TG.............G..........AT..CA.AT.G..AT....T.....T..G..C.CC...ATG........TG.T...C.T.....T.....C.....A..G...C........A.A..............C.....C...........T.....A..............A..TC.T.....T..T.G....T..A..C..........A..A.....T..TG........T.A..A.....T..G..A........A.....C.....T...A.T.....T..A.....G...............A.A.....C..G.....T..........................G..A.......................T.....T..............A........T..C..A.TG........TT..G.....TCC...........A..G....................T.....C..T..G...GTG........A..G..TG..GCA..............T........................C.G..T...........T..............GT....T..G.....G.....T..T.A......C.................A........G..A.....T..C.....T..CA...................AG....T.....C..C.....T..T........T..A...T..C...............GT..............A...........T........T........A........T..A.....A..A...........T...........T.....T........A.....A............C....C.....TTTTC-----------------------   [2833]
Amphisbaenidae    		--------------------------------------------------------------.A.....AGATC.A..C...A..GG.GT.C..G.CAA.GG.CTC..G..ATG.C..TTGTG..A---G..GT...C.T.GAA.CCG...CT.G.A.C.AC.A.AG..AA...G..AGA.A....A...TTTTTC..G...CCCA..GT..A.T..A......C...........T.....C..C......G.C.....A.GC........G.....A.C........AG..CT.......T..............TG....G..A..A..C..C..T.......G.........G.CC.....C.....T......C....T.............T...T.................A...........A..TA..........C..........ATG.T..G..A..G..A.....C...T....T..C...........T........TGATG.TG..G.......T..C..TGG......T..................T..TTC......A....AC...........G.T.....T.CA.AGC..A....A..G......T.TGT....GGACATGCTAG.C....AGG.C.TG.A.G..GTAC.AA..AA.....C..C..G.GTT.A.......A......CG.......C..A....................C...................TGG.......A.....A..T...........C........C..C........T.....A...C....C..T.....C............GT...C..C........T......A.C.....A..T..C.....A.......AC.....A.....T.............T...T..T..G..A..........G......C..CAG.T.......A.....T.T.G.......T...C.G..G.....C.TTC.T..C..G.....T..C..TC.T....TC.....A....TTG.G..C.......GC....TGT.TG....C.........A.G............T....T..A......C.......A.....A..T..T..A.....A..C...........T...........T..............G...........A...........A........CC........C.GC....T........G..................T..........G...........G.....T..C...AG............C..A..G..T........T........C.....T....................T..............A........A..A..G..T..T....................T..A.....A..GT.....T.......T...................A...A..CT..........G....GC..C......A..........A.....A..A.....CA.C.AG.AT.TG.................G.A......A.....AC.......A......G....T........T..C..CG......................C.....GC.....A....G...T..........TT....A..G..T............A.T..A..A..C.......................C..A........C.....T...........T.....A...........T..C..C..GG......GC......G..A...........GG...CTC..A...T........GAA.........T.....GC.C..C.................C........A...........C........A..C....................TG.............G..........AT..CACAT.G..A.....T.....T..G....CC...ATG........TG.T..TC.T..G..T.....C.....A..G.....T......A.A..............C.....C...........T.....A..............A..TC.T.....T..T.....CT..A..C..........A..A..A..T..TG..........A...A....T..G..A........A.....C.....T...A.T.....T..A.....G..T............A.A.....C..G.....T.................T...........T.......................T.....T..............A........T.....A.TG........T...G.....TCC...........A..G........A...........T.....C..T..G..AGTG....G...A.....T...GCA..............T...................G......G..T...........C.....T........GT....T..G..G..G.....T..T........C..............G..............A.....T..C.....T..CA....G..............AG....T.....C..C.....T..T........T..A...T..C...............GT..........TC..A...........T........T........A........T..A.....A..A...........T...........T..............A..................C....C.....ATTTCGAAAAATGAATGCCAGGCAATCA   [2797]
Trogonophidae     		............C..A.C..AC...T............TCAT.TGCCT.A..G...T....G.A.....ACA.C.AT.C...A..G..GT.C..G.GAA..G.CT...GA.ATGGC..TTGTGC.A---G..GTAG.C.T.GAA.CAG...CT.G...C.AC.A.AG..A.......AGA.A....A.....TTTC..A...CCCA..GC..C.T.........C...........T.....C..C........C.....A.GC........G.....A.C..T.........CT....G..C..............TG.......A..A..C..C..........G.........G.CC.....C.....T......C....T.............T...T..........................C..A..TA..........C..........ATG.T.....A..G..A.....C...T....T..C...........T........TG....TG..G.......T..C..TG..C.......................T..TTC...........AC....A......G.C.....T.CA.AGC..A....A..G......T.TGT.T..GGACATGCTAG.C....AGG.C.TG.A.GA..TAC.AA..AA.....C..C..G.GTT.A.......A......C........C..A..............T.....C........C..........TGG.......A.....A..T...........C........C..C........T.....A........C..T.....C............GT...C..C........T......A.C.....A..T..C..T..A........C.....A.....T.............T......T..G..A..........G......C..CAG.T.............T...G.......T...C.G........C.TT.....G.....CA.T.AC..TC.T....TC.....A....TAG.G..C.......GA....TGT.TG....C...........G............T....T..AC.....C.......A.....A..T..T..A.....AT.C..A........T...........T..........................A........T..A........CC........C.GC....T........G..................T..........G...........G.....C..C.................C..A..G..T........T........C.............................A...........A........A..A..G..T..T....................T..A.....A..GT.....T.......T...................AG..A..CT..........G...GGC..C.................A.....A..G.....CA.C.AG.AT.TG.................G.A......A.....AC.......A......G....T........T..C.......................T..T.....GC.....A....G...T..........TT....A..G..T............A.T..A.....C.......................C..A........C.....T...........T.....A..............C..C..G.......GC......G..A...........GG...C.C..A...T........GAA...G.....T.....GC.G..C.................C........A....................A..C..............C.....TG.............G..........AT..CACAT.G..A.....A.....T..G....CC...ATG....C...TG.T..TC.T.....T.....C.....A..G............A.A..............C.....A...........T.....A..............A..TC.T.....T..T.....CT..A..C..........A..A.....T..TG..........A...A....T.....A........A.....C.....T...A.T.....T..A.....G..T............A.A.....C..G.....T.................T...........T.......................T.....T..............A........T.....A.TG........T...G.....TCC...........A..G........A...........T.....C..T..G...GTG....G...A..G..TG..G.A..............T..........................G..T.CA........C.....T........GT....T..G.....G.....T..T........C.............................A.....T..C.....T...A....G........G.....AG....T.....C..C.....T..T........T..A...T..C..............CGT..............A...........T........T........A........T..A.....A..A.......................T..............A..................C....C.....ATTTCGAAAAATGAATGCCAGGCAATCA   [2859]
Helodermatidae    		...........GC........C...T.............CAT.TGGCT.G...CA.T....G.A...G..CA.C....C...A.....T..AC.A.CAA..G.CT...GTG..GGC..T..TG..ACCTC.GGCA..C.T.GAA.CAG...CC.....G.AC.CAA...CA...G..A.AAAT..G.G..T.TTTC..A....C.AT.GA....C..A...............CT.A.....T........C..C..C..T.GC................CT...........C..C..T..T........T.....TG....G..A.....T.....G.............GG..G.CC..G..C........T...C.......A..G.......T...T...........C..G........C........T...........C..T..T....ATG.GG.T..A..G..A.....C.G.T......A..G.....C..................G...G......GT..C..T..G.CA.G......CA.C..C....G.T.CTTC..............G.........T.C...G.T.CA.AGC..A....A.AG...CGA....T...GGGGCGTGCCAG......A.G.CATG...GA..TATGAG..AAG....CC.C..G.GTT.A.......A......C...........G..C..T..............G.....................G.C.....A....................C........C..C...T.......C..C.....G...........C..G.........GT...C..C..............G..C.....G...........A........T...........T....................T..G..A..........G....T.C..CAA.T........C....T..TGCAC....C...C..C.G.....CT.T.....A.....CT....C..TC.T.....C.....A.T..TCG....C.......GC....TGT..G.C..C........A...............T....T...C.T...C..........G...........A.....A..C....A......A.....A.....T..............G........C...........T...........CC.A......C.G.....T..............G............T..........A....................C.....C....................T.................C.....T.....A.............................A........A..A..G..T..........................AT....A..GT....C..A.....T...................AG..A..CT..........G....G...C....GG..G........C..C.....G......A...A..ATCTG.C................GA...G.....G...........A......G....T........T..C....A.....................A.....GC.....A....G...T.A........TT....A..................A.T..A.....C..C.....A.....G.....T..C..A........C.....C..G........C.....A.................C..C.......GC......G.CA.A.........GGG.G..C..A...T.........A....G..T..T..G..GC.T.............................T....................A..C..G..............C..TG.............G........G......A.AT.G..AT.G..T....CT.....C.CC...ATG...........T..T........T..G........A..G..............A........G.....C..T..C...........T..T..A...........G..G...C..........T.....CT..A..C.T........A..G..A..T..TG.............A.....T..G..............C..C.........A.T.....T..A.....T....................C..C..G.....T..C...........A..A.........T.........................T.....T..............A........T.....A.TG............G....G.CA...........A..G............G..........A..C...........G......C....G..TG...CA..............T.......................G..G..T...........T......C....C..GT.......G..G......T....C........C...........T.................A..............T..CA....G.....C.........G..........C...........T........T..A...T..C..........G....G....C.......T...........C..T..........................T..G.....T..A.......................T...........G..A..................C.......A..CTTTC-----------------------   [2839]
Anguidae          		.......A....C........C...T.............CAT.TGGCT.A...CA.T....G.A...T..CA.C....C...A.....T.GCC.A.CAA..G.CT...G.G.TTGC..T..TG..ACAAC..GCA..C.T.GAAGCTGG.TCT..C..G.AC.AAAG..CA...GA.A.AAAT..G......TTTC..ACA..T.AC.GA...GC..A............C..C..A.....C..C.....C.....C..T.GC.............T..CT...........C..C..T..T..............TG....G..A.....T.....G...............C.G.CT.....C........T...C.......A..G.......T...............C........C..C..C.....T...........C..T........TG.GG.T..A..G..A.....C...T....G..............T........TG....G...G......GT..C..T.......G......T............T.CTTC.....A..T...............G.C.....T.CA.AG...A....A.AG....G...TGT...GGGACGTGCTAG......A.G.C.TG...G...TATGAG..AAG....TC.C..GGGTT.A.......A......C...........G..C.................C....................GG.C.....A.....G..............C........C..C...T................G.TG........C............GT...C..C........T..............G...........A........C...........T....................T..G..A......A...G......C..CAG...............T..CG..C....C...C..........CA.TC....A.....CT...AC..TC.T.....G.....A....TTG....C.......GC....TGT....C..C.........A..............T....C..AC.....C...................G..A.....A..C....A......A...........T..............C....................T...........CC.A......C.G.....T...........................T..........A........A...........C..C.....C...................................C.....T.....A.............................G...........A..G..T.........T..........A.....AT....A...T....C..A.....G..................CA...A..CT..........G....G...C.....G...........T...............A...A..GT.TG.C................GA...G.....G..A........C......G....T........T..C....................T.....A..G..GT.....A....G...T..........TT....A..................A.T..A.....C........A.....G.....T.....A........C.....T...C.......T.....A.................C..C.......GC......G.T............GGG.GCAC..A...T.........AG...G........G..GC.T.............................T........G..C........A..C..G........C..C.....TG..A..........G........G.........T.G..A..G..T....CT.....C.CC...ATG...........T..T..A..G..T...........A..G..............A........G.....C..T..C...........T.....A...........G..G...C..........T.....CT..A..C.T........A..G.....T..TG........T....A.....T..G..............C..G.........A.T.....T..A.....T...C..........A.....C..C..G.....T..C...........G............T.........................T.....T.......................T..C..A.TG............G....GTCA...........A..G.......................A..C...........G......C....G..TG...CA..............T..............G...T..G.G..G..T...........T......C.GG.C..GT.......G..G...........C.....G..C...C.......T.................C..............T..CA....G.....C.........G..........C...........T........T..A...T..C..........G....G............T...........C..T....................C.....T..A.....T..A.......................T.....C.....G..A..................C..........CTTTC-----------------------   [2839]
Varanidae         		........GC.GC.A.G....C...T.........T.T.CAT.TG.CT.G..GC..T....A.---.T..CA.CT...C...T..G..T..CC.A.CAA..G.TT...T.....GC..TC.TG.TACAAC.TGT...C.T.GAAGCAGG..C....C.G.AC.AAAG.T...C.G..A.AAAT.....C.T.TTTC.CAGC.GC.AT..A....TG.A.A.............C........C..C.....C.....C..T.G.................CT.G.........C..C..T..T........G.....TG.G..G.TG.....G.....G.......G.....G..AG.CC..G..G............C.CA.......G.......T...T...........C..C.....G..C..C..C..T..C........C..T..T....ATG.GG.T..A..G........C...T...TG..............T..G.....TGAT..A...G.......T..A..T...GCC........T......A.....T..TTC.A...............A......GGC.....T.CA.AG...A....A.AG......AA...GA..GGGCATGCTAG......A.G.CA.....GA.CTATGAA..CAG....C..C..G.G.T.A.....G.A......C.......GC..G..C.............GT.GA.................CAA.G.C.....A.....A...........A..C...........C...T..........A...G..G.......A..C...........GGT...C...T.......T........A.....G.....C.....A........C...........T..A......T..........T..G..A.....T.....T.....C...GG.T.................G.......T...CT...G.....CT..C....G..G..CT...AC..TC.T...........A....TAG.G..CC....T.GC....TGT.TG.T..C..G........T........G...T....C..AC.....C.......G........T.....AC.......C..A........A...........A...........G..G....................T..A........CC.A......C.G...T.T..............G............T..........A.................T..C..C.C............C....................A.....C...........A.............................A........C..A..G..T..........................A.....A..GT....C........T..T.....T..C.......A...A.ACT..........G....G.........T...........T........T......A.G.AG.AT.TG.C.............A..GAT..G..A..............A..C..CA....T........T..C..........................A.....GC.....AT...G...T..........TT....A.....T............A.T..A.....C........A.....G.....T.....A.....C..C.....C...ATG.....T.......................C..CA......GC......G.CTG........G.GGG.GCAC..A...T.........A....G.....T.....GC.T.............................T...........C........A..C..G...........C.....T..............TT.......G..T.....AT.A..C..G..T....CT.....C.CC...ATG.....G...........A.....T..G........A..G..............A........A.....C..T..C...........T..T..G..............A...G.................T..A..C..........A..A....AT..TG.............A.....T..G......A.......C..C.....T..AA.T.....T..A.....T.......................C.....A..T...........A..A..A.........T.......C.................T.....T...............C.......T.....A.TG........T...G......CA...........A..G...........CG.......T..A..C.................TC.......TG...CA..............T......C.......T.....G.....G..T...........T......C.C..TGGG........G..G...........C........C........G....................A..............T..CA....................G.G........C........T..T........T..A...T.............G....G...T........T...........C..T..T..C....................T..A.....T..A..G....................T..............A..................C..........CTTTCGAAAAATGAATGCCAGACAATCA   [2859]
Serpentes         		............C........C.T.T.............CA..A.GCT.A.TG..CT....ATA...T.ACAAGT..CC...A.---AT..C..ATGAA..GCCTA..G.....GC.GT..TG..A---C..GT.....T.GAA.CAG.T.CT.....T.AT.AA....GCTTAG..A.A.AT.......GTTTTC.CG...GCCA..GA....TG.A.A....C........C........C..C..T..C..C.....A.GC...C.G......A...TT.....A...T..........T..............TG.G..G.....A..T...T.G.................G.CC..T..C........T...........A..........T...T..C.AG..............G..C........TA..........C..T..T....ATG.G..T..A.....AG....C.........CA.....CACT.C.T.A.G....AGA...AG..G.A.....T..C..T....CA.G......T..........T.T.CTT.T....CA...............C.A.C.....TTCA.AGC..A....A.AG....GAA.TGT.C.TGGATGTACTAG......A.GAT.TG.A.G...RGT.AAG.AA.....T..C....GTT.A.......A....T.A.....T...C.G..C..T........A...G.C......A............TGG.C.....A.....A..A.........A.C........C...........T.....A........G..T..A..C........T...GT...C...........T..T.....A.................A.....C..............T.............T......T.....A........A.G...T..C..CAA.T...T.........T..........GC...C....G.....CTTT....AA.....CT...AA..TTGT..T.A...T..A.....AG...GC.....CAGC....TCT.T..C..C..............G........TT.G..T..AC.C...C...................T........A..C...........G.........T.A..A.................CA.G.G............A........CC..........G...T.T........G...........A.....AT.......G..A...........G.....G.AC............................................C...........A..T.......................G..A..T.....A.....G..T........TT.A..............A........GT..........T..T..T.....C.....A...G.......CT..........G..T.G......T..T...........T..............AA.T.A..AA..T..G..............GGA............A........A......G....T.....GG.T..C..T.................A...T.A......C.A...A....T...T..........TT....A..A...........A...A.T..A..A..C........A.....T...........A........C.....C........G..T..A.................C.....C.......GC......G.CAG..........GGC..C..G.A...T.........AT.........T......C.G.....T..G....................T.....G.....C........A..C..CA.............C..T..G........G.............AT....CAT.A..T...T.T....CT..T....CC...A.T..............T........T...........A..G....................T........C.....C...........T..T..A...........T......C..........T.....CT.AC..C.A..T..A..A........T..TG..........A..A..A..T....................C.....T..AG.T.....C..A..G..TA..C.......A...........C..G.....T.........A.G.....A..............T....................T..A..T..T....................T.......TG......C.T..C....T.ACC...........A..G.......................A..C..T.....A........T........T...GCA..............T.....A.....A.......GT.GG..G..T.....T.....T......C.....C.GT.......G..............C......T...............................A...A..........T..CA....G.....C........TG....T..A..C...........T..GA.G..T......T..C.......T.......GT..........CA...........C..T..............A...........T..A.....T..A.....G.....T.......................G..A........A..C......C....C..A..CTTTCGAAAAATGAATGCCAGGCAGTCA   [2856]
Leiocephalus      		............C....G...C...T.T....T......CAT.TGGCT.A...CA.T....G.A...T..CACCT...CA..A.....T.G...A..AAA.GACT..G..G.TGGC.CT..T...A---C.GTC...C.T.GAA.CAG...CT..G..G.AC.AA.G...C......A.A.AT...AG.T.TTTTC..G...GCCAC.GA...GC..A.A.A..C..G.....CT.....A.T..C.....C..C.....A.GC................TT..T.......ACT.C.....T.....A.....A..TG....G..T.....C.....C.................G.CA..C...........T..CC...G..GA..........TG..T...........C...........C........GA.G.....T..CC.T..T....TTG.GC.T..A.AG..A..A..C...T...........A.A.TC..T........AG..T.AG..G.......T..C..T..C.CA.G......T............T.GTCC.AG..A..G........A......GTC..T..TTCA.AG...A....A.A.A.G.G.A..GTG..TGGACATGCTAG......A.G.CAG..A.G...T.C.AAG.AAG.C..TC.G..G.GTT.A.......A......C...........A..T.................C...................TGG.C.....A.....A............A.C........C.................A........G........C..G..............C..C..C..............A.....A...........AG.T.....C...........T.............T......T..C..A..T.......G...T..G...GG...AC..........T...G...T...T...C.G..G...T.CTGT.....A.....CCA..AC..TC.T.....A..........TAG....CC....A.GC....TGT.TG....C........................T....T..T.....AC.A....................A.....A..C..A..A.....A...........T..............G........C..A........T..C........CC.A......C.G.....G..............G.....CA.....T.A........A..............T.....C..A..G...........C.........A.......T..T.....T.....T........T..........................T.....T.....A..G..T.................C..T...........A...T.T..CT.......T...................A...G..CT..........C....G...C........C........T.....A..T.....CA...A..AT.TG..................GA......CT.............A......G....T........T..CT.G.............................CC.....AG...G...T...........A.C..A.....T..T.....A...A.T..A.....C........C...........T........A.....T.....T...........T..A..A.................C..........GC..TT..G.TA...........GG..GCA.......T.........AA...G..A..T.....GC.G.....T..G....................T...........C..C.....A..C........T...........TG.G...........G.........GA....T.A..A..A.....T....CT.....C.CA...ATG..............T........T...........A..G..............A.....T..A.....C.....C..C.A......T.....T..G...........A...CA......T..T.....CT..A..C.T.....A.....A.....T..TG.A........A..A.....T.........A.A.....C..C.....G...A.T.....T..A.....T..............G..C...T....G..C..T.................A........CT.........................T..A..T.......................T.....A.TC.........G..G.....TCA...........A..G........A...G..........A..C..................C....G..C....CA...........G..T.....C.................G..G..T...........T..............G.A......G.....C........C........C.................A........C.................T..CA..........C........AG....T..........A...T..TG....G..T..A.....AC..G.T.........C.T.................A.....C..T..........................T..A.....T..............A..T........T...........G..A..................C.T..C.....CTTTC-----------------------   [2836]
Iguaninae         		---------------------------------------------GCT.A...CA.T....G.A...T..CTTCT...C...A.....T.....AAGAAA.GACT.GGGTG.TGGC.CT..TG..A---C.CCCA..C.T.GAA.CTG...C...G..G.AC.AA.G.G.T......A.A.AT..GAG....TTTC..A...GCCA..GA...GC..A.A.A..C..G.....C........T..C.....C..C.....A.GC..............A.CT.GT........C........T.....A.....A..TG....G..T.....C.....C................A..CA..............T..CC......GA..........T...T....A..C...CC..........C..C.....AA.A..C..T..CC....T....CTG.AG.T..A.AG..A..A..C...T............CA.T...T.......GAGC.C.AG..G.A.....T..C..TG.C.C..G...C..T........T...T..TCC.....AA.G...............GTC..T..T.CA.AG..AA....A.A...G.G.C.GGTG..TGGACGTGCTAG......A.G.CAGG.A....TT.C.AA..AAG.C..CC.A..G.GTT.A.......AA.....C...........G..T.................C....................GG.C.....A.....A............A.C...........C........T.....A.................CC....T......G....C..C........T........A.....A...........AG.T.....C...........T.........T...T......T..G..A.................G..CAG....C......T...T...G....T..T...C.G..G...A..TGT.....A.....CT.T.AC..TC.T.....A..........TAG..A.C.......GC....TGT..G....C..............G.........T....T..T.....A.......................A.....A..C.....A.....A...........T..............G........C...........T..A.........C.A.....C..G.......................G..C......T..........A...........G..G.....T.................C.........A.......T..T.....C.....T....................T........G.....TG....T...C.A..G..A...........C.....G..T...........A..GT.....T.......T......T............A...A..CT..........T....G...C...........T.....T........T.....CA...A.TAT..G........T........GGA.....................A......G....T........T..CT.G.......................A.....CC.....AG...G..T............T.C..A..T..A............A.T..A.....C........A...........T........A.....C.....C...........T.....A.................C..........GC...T..G.CA...........GC..GCA.......T.....G...AA...G.....T......C.G.....T....................T..T...........C........A.......................TG.G...........G.........GA......A..G..A.....T....CT.....C.CA...A................T........T...........A..G..............A..............C.....G........T..T.....T..G...........A...CA......T........CT..A..C.T...........A.....T..TG.G........A..A.....T..G.................C........AA.T.....T..A.....T..............G.................T..........................CT.........................T..A..T.......................T.....A.TC............G.....TCA.GG........A..G..A.....A..............A..C...........G...........G..TG...CA...........G..T.....C.............GT..G..C..T...........T..............G........G.....G.....T..T........C............................................T..CA.A........C........TG....T..............T..T........T..A.....AC..G.T..C......CGT..T....................C..T..............C...........T..A.....T.....G........A..T........T...........G..A..................C.T..C..A..TTTTCGAAAAATGAATGCCAGACAATCA   [2814]
Polyglyphanodon   		??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
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Adriosaurus            	??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Pachyrhachis           	??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Haasiophis             	??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????

[rag-2 5365-6087=723]
Sphenodontida     		ATTAATGTAGTTCATAGCCAAGGTAAAAGTATGATTGTTATATTTGGGGGAAGATCATACATGCCTCTTGCACAAAGGACAACAGAAAAATGGAATAGTGTCGTAGATTGCATGCCCCACGTGTTTTTGGTTGACCTTGAGTTTGGATGTTGCACCTCATACATCCTCCCAGA?TTCCAGGATGGACTTTCCTTCCATATCTCCATTGCCAGAAATGATACCATCTATATCTTAGGGGGTCATTCCCTTGCAAACAACATCAGGCCCCCAAACTTATACAGGTTAAAAATAGACCTCCCACTAGGCAGCCCAGCCGTAAGTTGTACTGTCTTGCCTGGGGGTATTTCTGTATCCAGTGCTATTGTGAGTCAGACCAGCAATAATGTGTTTGTCATTGTTGGGGGCTACCATTCTGATAACCAGAAAAGGATGGATTGTAACATAGTCACCCTGGAAGATAACAAGATTGAGATTGTGGAAACGGAGGCACCAGACTGGACACCAGATATCAAACACTGCAAGATGTGGTTTGGAAGTGATATGGGTAAAGGGTCCATACTGTTTACTATCCCAGGGGACAATAGGCAGCTAATTTCAGATGCAAACTACTTTTATATTTTGAGGTGCAAGGGAGCAGGAGCAGATGAGGAGGAGGAGGTAGAGCAGATGGTGCAAACTTGCAGTCAGACTTCCACAGAAGATGCAGGAGACTCCACGCCTTTT   [723]
Dibamidae         		G.......G.......AT............G................A...............A..T...G......A..T........T.....C.....G..T..C..T..A..A..T......C.......G.C...............T........TGC.........TC.T....G....T.A..T..T...C.....C.CA.....GG.A.C........C...C.......A......A...A........C...A...T....TA....T...A..C..........T..CA.............T..G..C...TG............A..G.....A..G..T........CA..TCC........AG.A..G.A..................T........C.....T.....G..A....C...C....C....CTTG.A..G...........A.....A.......G......T..G..A.....CT.......G..............A............A.......A..T..TG.T.....A...GG...A...........C..A.......A...G..A.......................A..TC.T...---------..AAGT..ACC...CTC...A..AG...CA....TG.....C....GC....................T.....C......   [714]
Gekkoninae        		GC.G....G........T.....G....AA............A....A..G........T...G....G.G.........C........C.....C..A..G..T..C........A..AA.T...C.........C............C..T..T.....TG.TT.......GC.T...A.....T.C..T..T...C....TC..A.T.A......C............A.......C......A...A..CT....CT..A..T.....TC.C..T.A.A.......T..T.....CA.............T..G.AC..CTA.......T.......G.....A..G........C.......CA...GTG.AAG.A....AA..............A..T...........C.G..............T......TGC...A.A...A..T...........A.....A..T....G............A.....C..............TG.......A........G...........A..T..AGTT..C......GG...A...........C.AA...T...A..T.........T..T........GC....A.....A.A..T....---..AAGT...C....TTCT..A...G..ACA...GTA........A.G...T.................G.....T......   [720]
Pygopodinae       		G..G....G........T.G...G.....A............G....A..G........T.........AG.........T..T.....G.....C.AA..G..T..C..T.....G...A.T...C.A.......C............C..T..T......G.T...A....GC.T...AG....T.C..T..T...C....TC.............C........C...A....C..G......AC..A...T....C...A..T......C.C..T.A.A.......T..T.....CA.............T..G.AC..CTG.......T....A..G.....A..G........C.......CA...GTG.AAG.A..A.A..................T...........C............T...T......T.C...A.ATT.A......G.......A.....A.......GA...........A.....C......................CA........G.A.........A..T..AGTT.........GG...A..................T..CA..T.......T.T..T..C.....G.....A...C.A.A..TG...---..AA.T...C....CTCT..A......A....GG.G..T.....A.G...T.................T.....T......   [720]
Xantusiidae       		G.......G...T....T.....G..................A....A..G......C....AG......G............T.....C.....C...A.G..T..C..TG....A..T.....CC..A....T.CC.................T.....TGC...G.....GC.T..TAG....T.C..T..T...C....TC.G....C.G....C...C....C...A.......C......A...A...T....C......?.....TC.C..T...A.C.....T.....G..CA.T...........T..G.A...CTGCAC...............CA.A..G.....C..C..CA...CC....T..AGG.A.GG.A...............A..............C.G......G..A....T........C.A...A.G.A...A.C.....A..A..A..A.......AA.....T.....A...T.C..T.................A...........GT.C........A..T..AG.TG........GG...A...........C........C.....C.................C.......AA..TC.A.A..T....---..AAGT...C.A..CTC...A...C...CAA.C.TC..........G...A........C..............T......   [720]
Cordylidae        		G.......G........T....A...................A....A...............G...G..G...G..............C.....C.....G..T..C..T.....A..T.....CC.........C...A........C.....T.....TGC.........GC.T....G....T....T..T...C....TC.G.T.........C...C.....G..A.......G....G.A...A...T..T.C...A........TC.C......A.......T.....T...A.............T..G..C..CTG.T.............G..C..C...........C..CA...CC........AG.A.GG.A..........A....A.......................G.......T......TGC.A...A.T.A...........A..AATA..A.......A...A........A.....C.......................A........G...........A..T..AG.T.........GG...A.....A..T..C................................C........A..TC.AA...TG.A.---..AAGT.....A..CTC...A.......CC....TA........A.G...T.................T..A..T......   [720]
Scincidae         		G....C..G..AT....T........GC.G............G....A.....G.....T...T......G......A.....T.....C.....C.....G..T..C..T.....G..T.....C...A......C...A..C.....CA.T..T.....TGC......T..GC.T...AG....T.C..T..T...C.....C.G.T.........C..TC.......AA.......G.....TA...A...T........A.....C..TC.T..T...A.......T.....T..T........T.....T..G..C..CTA...G..AT....A..G..C..A........C.....CA...CC........AG.A..G.A.....................T.....C..C........G.......T....C...CCA.T.ATG.A.....C........A..A..A.......A............A.....G..........G............A........G..C........A..T..TA.TG.C......GG...A...........C.A...............G..............C.C.....AA..TC.A.A..TG...---..AA.T...C....CT.G..AG.T....CA...GTA..........G...T...........G.....T.....T......   [720]
Teiidae           		?????????????????????.......A..................T.....G..C......G......G.G.G........T.....G.....C.....A..T..C..T.....AT.TA.A...C.......T.C.A.A..............TA.T..TGC.........GA.T..AAG....T.C..T..T..CC.....C.............C............A....T..A......A...A......T.....A........TC.C...C.TA.......T.....T..TT....GTC......T..G..C...TG..C.........T..A..C..A..G........C..CA...CC..A.....AG.CC.A.AA.A...T.....C..A..G.................A.....A....T...C..TTC.A..CT...A..T.....T.....A..A..AACA....GA...........A.....T..T....................A....................A..T.....T......C..GGC..A..T..A..T....A....GCCC.......G...........C..C........A...C.A.A.---------..A.GT..TC.A..CTCT..AA..C...CA....TA..T.......G...A...........T.....A..T..T..C...   [714]
Lacertidae        		........G........T..............A.........G..................A.G.C..C.G.G.G........T.....C.....C.....G..T..C..T.....AT..A.A...C.......T.C...A..................C.TGC.T...A...GC.TAT..GG...T.C.....T...C.....C....T........C............A....A..C......A...A..GT..T.CG..A........TC.C..T..AA.....G.T.....T..CT....A........T..G.AC....G...T...T....T..G..C..A.....A.....C..CA...CC.....TG.AG.CC.G.AA.......................C..............G..A....T......T.C.A...A...A..............A.....A.......GAC..........A.....C.......................A........G...........A..T..AG...........GG...A..T..A.....C....................T...........CT.G.....A.....A.A.---------..AAGT..TC....CCC...A.......CA...GTG..........G...T.................G..T.........   [714]
Rhineuridae       		........G..C.....T........................A................T.A.G......G.G.G........T.....T.....CT....G..T..C........AT.TA.A...C.........C...A........C.....T.....TGCTT.TG....GC.T....G....T.C..T..T...C...GTC..A..........C............A....A..C......A...A...T.....G.....T.....TC.C..T...G.......CA....T..CT....A........T..G..C..CTG.......T....T..G..C..A..G..T.....C..CA...CC....T...AG.CC.G.AA.............................C...........A....T......T.C.A...A...T...A..........A.....A.......GA..A........A.....C.......................A........G...........A..T..AG.......A...GG...A.....A.....C.A...A......G....A.....T........CT.GC....A..TC.A.A.---------..AAGT..TC....CTC...A.......CA...GTG..........GC..T.................G..T..T......   [714]
Bipedidae         		........G.......................C.........A.......G..G.......A.G......G.G.G........T.....C.....C.C...G..T..C..T..A..ATT.A.A...C..........C..A..............T.....TGC.T..T....AC.T...AG....T....A..T...C....TC....T........C....C.......A....A..C......A...A...T....CG...........TC.C......A.......T..T..T..CT....A........T..T.....CTG..C....T....T..A..C..A..G..T.....C..CC...CC....T...TG.CC.G.AA.................T....................G..A....TC.....T.C.A.A.A...A...A........T.A.....AA.A....GA..A.G......A.....C..............T......GCA........G.....C.....A..T..A........A...GG...A.....A.....C.......A.....T...............C..CT.G.....A..TC.AAA.---------..AAG...TC....TTC...A......ACA...GT......C....G...T.................G..T..T..A...   [714]
Amphisbaenidae    		........G.................................A..........G.......A.G......G.G.G........T.....C.....C.....G..T..C..T.....ATT.A.A...C........T....C..............T.....TGCTG..T....AC.T...AGC...T.......T...C....TC....T........C..A.....C...A....A........AGC..A...T..T..G.....A..T..TC.C.TT...A....G..T.....T..CT....A........T..T..C..CTG..CT...T....T..A..C..A..G..T.....C..CC...CC..A.T...TG.CC.G.AA.................T.......G............G..A....T......T.C.A.A.A...A...A.......A..A.....AA.A....GA..A.G......A.....C..............T......GCA........G.....C.....A..T..A........A...GG...A.....A.....C.............T..................CT.G.....A..TC.AAA.---------..AAGT..TCG...TTC...A.......CA...GTG........A.G...T.................G..T..T..A...   [714]
Trogonophidae     		G.......G.................................A..........G.......A.G......G.G.G........T.....T.....C.C...G..T..C..T.....ATT.A.TA..C..........CA.A...........T..T....TTGC.G..T....AC.T...AG....T....G..T...C.G..TC....T........C............A.T..A.........A...A...T.....G...........TC.C..T...A.T.....T.....T..CT....A........T..C..C..CTG..C....T....T..A..C..A..G..T.....C..CC.TTCC....T...TG.CC.G.AA.................A....................G..A....TC.....T.C.A.A.A...A...A..........A.....AA.A....GA..A.G......A.....C..............T.......CA........G.....C.....A..T..A........A...GG...A.....A.....C.............T..................CT.G.....A..TC.AAA.---------..AAGT..TC....TTC...A.......CA....TG..T.....A.G...T.................G..T..T..A...   [714]
Helodermatidae    		........G.....C..T....A.....A......A......A....A...............G..A.C.G...G........T.....C.....C.....G..C..C..T.....AT..A.A...C.........C..............C...T..C..TGC...T.....AC.T....G....T.C..T..T...C....GC.............C............A....A.........A...A...T....C...A........TC.C..T.A.A.......T.....T..CT.............T..G.AC..CTG...............G........G........C..CA...CC.......AAG.CC.G.AA...........G..A..............C........G.......T......T.CGA...AT..A..............CA....A..A....G............A.....T.....A.................C........G...........A..T..AAAT.....A..CGG......C..A.....CC...............................C..G.....A..TC.A...---------..AAGT..TC....CTC...A...C..ACA...GTG..........G...T.................G..T..T......   [714]
Anguidae         		..G.....G.....C..T....A.....A.............A....A...............G......G...G........C.....C.....C.....G..C..C..TG....TT.TA.A..CC.A.......C...A..........CT..T..C..TGCT........AC.T...AG....T.C..T..T........TC..........................A....A.........A...A...T....C...A........TC.C..T.A.A.......T.....T..CT.............T..G.AC..CTG............T..G........G........C..CA...CC.......AAG.CC.G.AA........A..G..A..T...........C........G.......T......T.C.A....T..A..........C...A.....A.......G.........G..A.....T.....A.....G........A..C........G......G....A..T..AAAT.....A..C.GC..T.....A.....CC....T...........A..............C..G.....A..TC.A...---------..ACGT..TC....CTC...A...T..ACA...GTG..........G...A.................A..T..T......   [714]
Varanidae         		......A.G..C..C..T....A.....A......CA.....A....A.....................CG...G........T.....C.....C.....G..T..C..T.....A..GA.A...C.........C...T..........CT..T..C..TGC.........GC.T....G....T.C..T..T...C.T..TC.............C............A....A..C......A...A...T..T.C...A........TC.C..T..AA....GG.T.....T..CT............AT..T..C..CTG...T....TA..T........A..G........C..CA...CC...GT..AAG.CC.G.AA....................T.................G.......T......T.C....CATG.A..............A.....AA......G...A........A.....C.....A.....G...A.......C........G.....C.....A..T..AA.GG..T.A...GGC..T.....A.....CC....A..TG................TC......GG..A..A.....A...---------..AAGT..TC....CTCT..AG..T..ACA....TG..........G...A.................T..T..T......   [714]
Serpentes         		........G.....C....................G......A.............T.....AG......GG..G........T.....T...........GA.T.....T.....A..TA.A...C.......T.C...A........C..T..T.....TGCT........A..T...A....TT....T..T...C....TC...T.CA...................A....A..C......T.G.A...T..T.....A..T.....T..C..T.A.A.......T..T..T..TT....T..T.....A..G..C..CTTCA.T...T....A..A..C..A..C........C..CA...C......TG.AG.A....AA.A............A..T...........C...............AT......T.CCA...AT..A..T........A..A.....A.......G...A........A.....C...........G...........A........G.AC........A..T..AA....TT.A...GG...A.....A..T........A..GG........A.......T..C..C..A....AA..TC.....---------..AAGT..TC..AGCC.G..A.......CA...GTA..T.......GC..T...........T.....G..T..T......   [714]
Leiocephalus      		..C....AG.....C..T.....C.........G........A....A.....G.........G......G......A..C..T.....C...........A..G..C..TC....AG.TA.A..CC..A..........A.....G..C.....T.....T.C...A.....AC.T...AG...GT.C..T..T...C.T...C.....CA................G.TA.T..A........TA..CA...T..T.C...A..T.....TC.C..T...A.......T..T.....CT....A........T..T..C..CTG.........A.....C.....A..T........C.......CC........TG.CC.A.AA.........A...................C........G.......T...C..T.C.....A...T........T.....A.....A..A....GA..A.......TA.....C.....A..........................G.....C.....A..T..AA.T.....C...GGA..T.....A.....C.....C...........................G.A....AA..T..A...---------..ATGT..TC....CTCT..A.......CA...GT?.....C....G...T.................A.....T......   [714]
Iguaninae         		..C.....G.....C..T..........A......G......A..........G.....T...G......G.........C..C.....C.....C.....G.....C..T.....AGTTA.A..CC..A..........A.....G..C...........T.A...A.....AC.T...AG....T.C..T..T.....T...C.....CA..................TA....A......A..A..CA...T..T.G...A........TC.C..T...A.......T..T.....CT....T.....G..T..C.AC..CTG.........A..A..GG....A..T........C....CC.CC....T...TG.CC.A.AA.............................C........G.......T......T.C.A...A..................A.....A.......G.........G..A.....C.....A.................A........G.....C.....A..T..AG.T.....T...GGA..T.....A.....C.......................T.T.......G.G....AA..TC.A...---------..A.GT..TC....CTCT..A..A....CC...GTG.....C..A.G...T.................A..T..T..A...   [714]
Polyglyphanodon   		???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Macrocephalosaurus  	???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Sineoamphisbaena       	???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Aigialosauridae       	???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Mosasauridae          	???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Dolichosauridae        	???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Adriosaurus            	???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Pachyrhachis           	???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Haasiophis             	???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????

[R35 6088-6819=732]
Sphenodontida     		CTGTCTGTGGACGATTTGATAAGTGTCGTGCCAGTGAGTATCTTTATGTTCATGCAGTGGTCGAGTGAGGCACTACCCCAGCCTCTCTGCACGACTTCGGCTCTGCTGTACTTATTTCAGGGCATTTCTAGCAATCTAAAAGGGTCTCTCATTGTTTCATATAACTTCTACACAGCCAACAAAACTGTGGCC---AGTCAGGGGGCCACTAAAAGGCCAGTGAGCATAATATGGGCCATTCTCACTATCTGGATTGTCAGTTTGCTGATCTGCATTTTGCCTCTCTTCGGTTGGGGCACCTATGTTTCCACAACCTGGGGTTGCCTCACAGACTGTGCCAGTTCCTATGTCTTGTTTCTGTTTGTTGTCTACTCATTGTGCTTCTGCCTCCTCACTGTGCTTTCCATTCCTCTAATTTACCAGCTGTTGTGCTCAGATGAGCACCAGCGTCTTAATGTTGATTACCAGGAAATTGCCCGAGGCTATTTCTCCCCCGGGACTCCCCCTATCAGTAGT---GACACCCCATCCTTTTCTCCAGAAGATCCAGTGGATAACACCTTGAAGCATTTCCGAGATACCTGTCCGAACTCCAAGGCGACATCCAGGCAAAGCCCAGCTGGG---AGCTGTGGGCTGGACCCCCATGGCACAAATAGTGTCCAGGGCAACACCAGAAACTCCACTGTTGGGTTTGCTCAGAAACGGTTTTCGCTGATTCTTGCTCTCACC   [723]
Dibamidae         		T..A...........C.CG.......G.....GA...CG.....C...G...A.......CT..A....ATT..T......A..T.G..T.T......A........C...A...........T....A...C....G.TG..C...........GG.T.....T.......GTCTG.......TG.GAAT.---.CC..A..A.T...C...T.............G.CT..............C..T...................CG..............A.G...C........T...ACC.....TG.T.....A.....T........CT.......T...........C..C....CCA.......TC.C..T..T..T.....TGTG.....C.................T..A...C................T....ACT......A.........TC........A....T........T..T...G.A..T..A..TG.A...---CGT....TG..TC.C...........C..T.CAA....A..T........C....A....G.T....A......AG.TC.A..GAT.........T------------------..C......TA....A...G.C.A.C...A.CATATC...G.CCG....T......G.A...........GG..C..C..C........G..A..G.T.   [708]
Gekkoninae        		????????????????????C..C..G.....G..C.CC.....C...C...A........T..AC...CTG..G.....CA.CT.G.....AG....C..A..............C..A..GT....A........C.TG........TG.A.....G.............GCCT.C...GG.TG.GAA.T---G.C..C.CA...T.C.................G..C..............A.......................T..T...........G..T..C......G.....TCCC....CT.......A.....T..G.....CA..........C...C.......C....CCA.T.....GC....T.....T.......T?.....C.....C..?..G.....T...........T........T..G....A...CT.CAA.........TC....C.T......T........A..T..CT.A..?..AG.TG.....---C.TGAG.TGC..C.............C......A...GATT..CA.....C.G..A..T.G.T....G......TG.CC.ACTGG.TGA.A....T..C..C.AC---.T......AG....T.A.T......TGC.C.....G.C.TA..C..G.C...GT.T..T...G.AA...........G..C..C..A........G.....G.TA   [723]
Pygopodinae       		??????????????????????????????????...CC.....CC..C...A.......?T..AC...ATG..C...A..A....G.....A........A........T..C..C......T....G.....CT.C.TG........T..A...................GCCT.CG.....TG.GAAG.---..C..ATCC.G.G.C........T........G...........C.....C......................................G..T..C.....G......A.CC....TT.......A......C.C.....CA.T..C..T..C..T.....C..T.....CA.T.....CC....T.....T......GTC.....C...G.C.....GC....T...T.......T..G.....T..A....A...CT.CAA.........TC....C.T......T.....T..T..T...T.C..T..AC.TG..G..---CC....TTG...C.............CT.T.C.A..CGACT..CC.......G..A...GG.T..CTG......GG.TC.A.TGATT.....G..T..CATG.AC---........AG....T.A.T.C...GTGC.C.....G.CAT..GC..G.C.G.GT.T......G.AA..........GG..C..C.????????????????????   [723]
Xantusiidae       		T..A.......T...C....C.....G..........CA..T..C...C...AA......CT..AC...ATG..T......A.CT.G.....T........A.....................T.C..A........G.TG........TT.A.....T.............GCCT........TG.GAA.T---..C..A..A.TG..AC.C..............GG...........................................T.........T.G.GT..A........T....CC.....CT.......A.....T..T.....CA.......T..CAC..G......C.....AA....TATGC.T..T.....T.....TGTG.....C..T........G.....T...T.......T...........A....A....T...A......T..TC....CA.T.....T........T..T...T.A..T..A.C.......---C....T....G.C.C...........CA.T...A....AG..........C....A....G.T....A......TG.TC.A..GGT..........T....A.AC---........A.......A.T.CA.....C.ACAC..A.CATA.....A.C...G..TT.....G.AA...........G..C..??????????????????????   [723]
Cordylidae        		T..A.......T...C....C.....G.....G....CC.....C..A....A........T..A....A.G..T.....AA.CT.G..............G.....................T....G........G.TG.C......GG.G.....C..............TCT..G.....TG.G.AG.---..C..AA.A.TG..A..T..............G..C.............TG...............C..........T...........G.GT.................C.....CT.......A.....T..C....ACA.....A.T..CA..........C.....CA........C.T..T.....T.....TGT......C..............A..T.......................G....A....T.C.A......T..TC................C.....T..T...T.G..T..A.CTG....C---C....A..G...C.C...........CA.T...A....AG...............A...GG.T....A......TG.TC.A.TGGT..........G...TG.AC---........A.C.....G.T.C...T..CCA.AC..A.CAT......GTC......T......G.AA...........G..T..C..C..C...T.G.....G...   [723]
Scincidae         		TG.A..........CC....C.....G.....G...?CA.....C...G...A.......A..G.C...ATG..C..G...AGCT.G.....A.....A..A...........G.........T.C..C.....C..G.TG.........G.C.....T..C..........GCCT..G.....TG.GAA..ACC..C.GA..A.G...C...........C.....GG.C..............G........G.................TG..C....C..T.G...C...........CACC.T...CC.......G......G.G.....CAG......G...A..........C.....GA.......CC.T........T..G..TGTC.....CG..........C.....T......C..........C.....G....A...AT.C.AC.....T..TC....C........G..C.....TT.T...T.G.GT..G..TG....C---C....A.TCG.GC.C...........CT.T...A.C..AG.....G....C....A....G.T....AA.....TG.TC...G.G.........T........AC---........T.......A.T.CA.....CCC.AC..G...TA.....G.C...G..A...GC.G.AT...........G..C..C.....C...T.G..C..G...   [726]
Teiidae           		????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????   [732]
Lacertidae        		????????????????????C...A.A.......C..CA.....C...C...A...T....T.G.....ATG.........A.CT.G.....AG.......A..............C......T....C........G.TG.....G.....A.....G.............GCCTT.G...G.TG.GAA..---..C..A.......GC..G........C.....GG.C......G...................T..CC.A........T...........T.G...C.....T.G.....CC.....CC.T.....G.....G........CA.A..C..T..CA.T..A.....C.....C........GC.................CTCA....C.....C...T.......T......C....T...........G....A...GT.C.A......T..CC.......A.................T...T.A..T..G.C.G.CGA.CTTC.......T...C.C.....G.....CA.T...T.C..A................A..GCG.T.....A..TG....CCTC.A.GTT.............TG.AC---CAT.A...A.....T.G.T.C....TGC.AGAG.GG.CCTA..G..G.C...C.CT......G.AA...........G..C.....C........G..G..G...   [726]
Rhineuridae       		???????????????????????????????????..CG.....G...C...A.T.T....TA.A...AATG..T..A...A.CT.G.....A........A.....................T....A........G.TG..A.....TG.A.....T.............GTCTT.G.....TG.GAA..---..C..A..A.....C..G..A.....A.....G.........G......TG............T.............T...........G.G...C.....TTG.....CC.....CT.T.....A.....T..T.....C.A...C..T..CA.T..A.....C...A.AA......TGC..........T.......T......C.................T...T..C................G....A....T...A......T..TC....CA.......T........T..T...T.A..T..A..TG..G..CATC....A...GT.C.C...........CA.T...AG...A................A....G.T....T...TG.TG.CC.C.A.GTT..A.....T....TG.AC---CAT.A...A.....T.G.T.CA....GC.AGA...A.CATA...T.G.C.G...CT......G.AA.....A.....G..C..........??????????????   [726]
Bipedidae         		T..A.......T...C.......C..G.......C..CG.....C...C...A...C....T..A.A.AATG..T......A.C..G......G....A..A.....................T....A........G.TG........A..A.....T.............GTCTT.G....TTG.G.A..---....GA.A......C..GCA......A.....G..............................T..C..........T.........T.T.G...C.....TGT...CACC.T...CT.T.....A.....T..T.....CA....C..T..CA.T..A.....C...A.CA....T.TGC....T.....T.......T......C...........G.....T...T........................A...CT.C.A......T..TC....CA................T..T...T.A..A..A..AGA.G..CGTC.T..A......C.C...........CA.T...A....AT....C..........A....G.T..C.T...TA.TG.CC.C.A.GTT..A.....T.....G.AC---CAT.A...A.....T.G.T..A....GC.CGAG..ATCATA.....G.C.G...CT......G.AA...........G..T.....C......T.G.....G..A   [726]
Amphisbaenidae    		T..A...........C..........G..........CA.....C...C.T.A...C....T..A.CGAATG..T..T...A.C..G......G.......A.....................T....A........G.TG......G.T..A...................GTCTT.G....CTG.GAA..---.TC..A.A......C.GGCAA.....A.....G..G..............C........GA..T..C..........T.........T.G.GT..C.....TGT....ACC.TT..C..T.....A.....T..T.....CA....C..T..CA.T..A..C..C..CA.CA......TGC....T.....T.......T......C.................T...T........................A.T.CT.C.A......T..TC....AA................T..T...T.A.....A..TG..G..CGTTG..TA......C.C..G...C....CA.T...AG...AT.T..C...G......A...AT.T..C.T...TA.TG.CC.C.ATGTT..A.G...T....AG.AC---CAT.A...A.....T.A.T.CT.T..GC..GAG..ATCTTA..G..G.C.G...CT......G.AA...........G..C.....C......T.G.....G..A   [726]
Trogonophidae     		???????????????????????????????????????????????????.A...C....T..A.AGAATG..T..T...A.C..G.....AG....A..A.....................T....A........G.TG......G.T..A.....T............TGTCTT......CTG.GAA..---..C..A.A......C..GC.A.....A.....G.................C......C.GA..T..C..........T.........T.G.G...C.....TGT....ACC.T...CT.T.....A.....T..T.....CA....C..T..CA.T..A..C..C...A.CA......TGC....T.....T..T....T........................T...T........................A.T.CT.CAA......T..TC....CA................T..T...T.A..G..A..GG..G..CGTC....A......C.C..A...C....CA.T...AG...AT....C..........A....G.T..C.T..CTA.TG.CC.C.ACGTT..A.G...T....AG.AC---CAT.A...A.....T.A.T.CA...TGCG.GAG.GATCATA..G..G.C.G...CT......G.AA..........GG..C.....T......T.G.....G..G   [726]
Helodermatidae    		T..A.G........CC.C..C.....G.....G....TG.....C...C...A..TC.....A.A....ATG..T....C.A.CT.G......G.......AT.............C......T....G.....C..G.TG..C.....TG.A.....T.............GCCT..G....GTG.GTAG.---..C..C...........G..............G.CC.....TG.......C..T.....G......C......................G.GT..C.....T.......C......CT.......A.....T........CAG......T..CA....A.....C.....AA....T...C....T.....T.....TG.......C.....C.....C.....T..AT.AC.......G..C..A..G..C.A..CCT...A.........TC....C..T.....A.....G..A..A...T.A..T..C..TG..C..---C....A......C.C...........CA.T...A....AG...............AT...G.T....A......TG.CC.A.G.GT.........T......CAC---T..A..A.A.......A.T...A....C.A..C.AG.C.T......G.C.....AT......G.AA...........G..C..C...........G.....G..?   [723]
Anguidae          		?..A.G.....T..CC....G.....G..........CAG....C...C...A..TC...A.A.AC...ATT..C....C.A.CT.G......G.......AT...................TT.C..A..........TG........TG.A.....T.............GCCT..G....GTG.GT.G.---..C..A......G.C..G........C.....G..C.....TG....T..C..T.....G.............................G.GT..C.....T.....C?CC.....CT.......A.....T.?G.....CAG...C..T..CA....A.....C...A.AA....T........T............CTC.....C.....C...........T...T.AC.......G..C.....T..T.A...CT...A...C.....TC....C........A........T..A...T..G.T..C..TG..C..---C....A.TG...C.............CA.T...A...TA....C...........AT..C..T....A......TGCCC..G..AT.C.......T.......AC---CA.G....A.......G.T.C......C.A..C.AG.CAT......G.C......T...G..G.AA...........G..C..C...........G.....G???   [723]
Varanidae         		T..A.G........CC.C..C.....G.CA..G.CA.CG.....C...C...A..T........A....A.G..TT...CAAGCT.G.....CG....A..AT................A...T....A........G.TG.....C..TG.G.....T.............GTCT..G....GTG.GAAG.---..C..A.......GC..G..............G..C.....TG.C.....A..............C......C.......CC.......G.G...C.............CC.....CT.......A.....T..C.....CAG.........CA....A..C..C...A..A.............T...........TG.......G........G..C.....T......C....T..T........AT.T.A...CT...AA........TC....CA.......A........T..T...T.A..T..AG.T......---C....AT.....C.C...........CA.T...A....A.............C...T...G.T..C.A......TG.CC.A.T.GT......G..T.....GAAT---C....CA..G......G.T.C..G...C.AGA...A.CAT......G.C......T......G.AA..............C..C..A.....A..G.....G..A   [723]
Serpentes         		...AG......T...C....T..C..G..A....CA.CA..T......C...A..CT....T..A....ATG..T......A.CT.G..T..C.....A..G..A..A...............T.C..C.....CT.G.TG.....C..TG.A.....C.............GCCT........TG.GA...---..C..A........C..G..............G........TG....................T..........T..T.........T.A.GT..C.............C.C....CG.......A...T.T.TT.....CA.......G..CA..........C...A.AA.............T.....T.....A.T......C...........T.....T...T..C....T...........A....ACT..T...A......T..TC....CA.TG....AC....T..T..T...GTA..T.GAT.TGAC...---C....AT....TC..C..T.......CA.T...A....A...........C------------....AA....TTG.CC.AGT.A....A.....T....A..AC---T.....CACT......ATT........CGA.A...G.CACCT....A.C.G...AT......G.AA..............C..C.....A.....G.....G...   [711]
Leiocephalus      		T..A...........C..G.C..C..G.......CA.CA.........C...A..TT....T..AC...ATG..T....C.A.CT.G.....C.....A..A.....................T.............G.TG..A..C..GG..........C..........GCCT..G.....TG.AAA..---..C..CCA...T..C...........C.....G........AG.......C..T.....G.................T.............GT..C........T....CC..G..TT.......G...T.T.TG.....CAAT.....T...A.T..A.....C..CA.CA....T..C.....T....T.......CT......C...........C.....T.....C..A..T.....C..C..A.T..A....T...A......T..TC....CA..A....A........A..T..AT.A.....A..GG.A.T.---C....A.AG..TC.C........G..CA.T.G.AC...A.GTC....A.....T.A....G.TG.C.A......TG.TC.C.G.AA.CCAA..GTT.......ATGACCA....AAAT......A.T.CA.....C.A.ACA.A..ATATC...G.C......T......G.AA...........G..C..C..T........G.....A...   [726]
Iguaninae         		T..A...........C..G.C..CA.......G.C..CG.........C...A..TT...CT..AC...ATG..T..T.CCA.CT.G.....C........G....................TT....C........G.TG.....C..G..A........C.....T....GCCT.......TTG.AAA..---..C..CA....T..C...........C.....G........TG.......C..T.....G..............T..T.............GT..C.....T..T....CC..A..CT.......G.....T.TG....ACT.T.....T..CA....A.....C..CA.CA.......C.....T..T.T.......CT......A...........C...........T.................A.T..A....TG..A......T..TC....CA.......A........GT.T...T.A.....A..GG...T.---C....A..?...C.C........G...A.T.G.AC...A.G............T.A....G.TG.C.A......TG.CC.CCG.AT.CA....G.T.......ATGACC.A...A.A.......G.T..........A.A...A.CATATC...G.C......T......G.AA...........G..C..C..C........G.....G...   [726]
Polyglyphanodon   		????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Macrocephalosaurus  	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Sineoamphisbaena       	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Aigialosauridae       	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Mosasauridae          	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Dolichosauridae        	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Adriosaurus            	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Pachyrhachis           	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Haasiophis             	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????

[Hox 6820-7263=444]
Sphenodontida     		????GCCTGGAGGAGATTAACAAGAACATGGAAGCGGGAGGCTTCCACCCCGGCGGCAACTTTGCCTCCGCGGCGGCGGCCGCCAACCACCAGTGCCGGAATCTGATGGCGCATCCCGCATCCCTGGCTGCCGGCGCCCCCAGCGCCGCTGCCGCCTCCAGCGAGGCGCCCGGCGCCGGCATGGCCGAGCCA---------GCTGTCAAACAGTGCAGCCCGTGCTCGGCCGCC---GTGCAGAGCTCCTCCGGGCCGGCAGCCGCCCTGCCCTATGGGTACTTCGGGAGCGGC------------TACTACCCCTGCCGCATGAGCCACCAC---------AACGCCGCCGCCGCCATCAAATCCTGCGCC---CAGCCCGGC------TCCACCTTCGCCGACAAATACATGGACACCTCGGTCGAAGAGTTCACCTCCCGG   [402]
Dibamidae         		??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????C......C...C.G..G............AA................G.CGGCGCGGCG........G.............CG....G....------------------------..C...---T.......C..C........C......GGCGGCGGCGGC........G.........CC.......CCC------........G------C....GC.......GGCG.....G.C.------G..G.............G.........T....CTCG??????????????????   [399]
Gekkoninae        		AACA.............C.................C---.........G.G...AC......C------------.....G....G.---...........C.................T........C...CCG.G.---....G...C...A..................C..................CGGCCCC---C.G.....G...........C............GCC......G..........C..C..C...---........C..C........C......------------........G..................---------.........------C....G.........---.......C.GCCGCCG..T.............G.................G..G..C...........C   [387]
Pygopodinae       		????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????   [444]
Xantusiidae       		????????????????????????????????...C---..T......G.T...A.......C------------.GC..G......---........C..C........T..C..G..G..G.....C.G.CCG.G.---........A...ATG..A.............C............A.....TGGCGCA---........CA..........C............---.....A........G..C.....T..G---........C..C........C......------------......------.......A.......---------.....T...------C....G.........---.......C.------...T.............G...........G.....G.....C....G......C   [372]
Cordylidae        		AACA.............C.................C---..T......G.G...A........------------.G...G......---....................T..C..G..G........A...CCT.G.---........C...A.A..G..............G..G..G.....A.....CGGGGCA---.....G..CA..........C.....C......---..............G..C..C..C...---.......GC..C........C......------------........G......CCTCA.......---------.........------C....G.........---.......C.------...T.............G.................G..G..C.....T.....C   [378]
Scincidae         		AACA.............C.................C---..T......G.G...A.......C------------.GA.........---....................T........G..T.....C...CCG.G.---......T.C...A.G..............A.C............A.....GGGGGCA---........CA..........C.....C......---..............G..C.....C...---........C..C........C......------------........G..........A.......---------.........------C....G.........---.......C.------...T.............G...........G.....G..G..C...........C   [378]
Teiidae           		AACA.............C................TC---..T..T...G.G...A.......C------------.....G......---..............C........C.....C..G.....C...CCG.G.---....G...A...C.G..G...........?.C..................CGGCGCA---........G...........T........G...---.........C.G..G..C..C..C...---........CA.C.....T..C......------------....T...T..................---------..T......------C....G.........---.......C.------...T.............G...........G....GG.....C...........C   [378]
Lacertidae        		?????.T............................C---.........G.G...AC......C------------..C..G......---...........C........T..C..A..C..G.....C...CCG.G.---........A...C.G..GG...........TC.T................CGGGGCC---T.C.....G...........C...........G---.........A.G..G........C..G---...........C........C......------------....T...G..................---------........G------C....G..G.....G---.......CA------G..T.............G...........G....GG..G..C...........C   [378]
Rhineuridae       		AACA.............C.................C---..T......G.G...AC......C------------..C..G......---...........C........T.....A..C..G.....C..TCCG.G.---........A...A.G..............G.CGA..........A.....CGGGGCA---........G..A........C............---..............G..C..C..C...---........C..C........C...A..------------....T...G..................---------.........------C..............---.......C.------..AT.......T.................G.....G.....C.....T.....C   [378]
Bipedidae         		AACA..T..........C.................T---..T..T...G.....AC......C------------...A.G......---.....T.....C........T..C..A..C..T..A..C..TCCG.G.---G..A....A...A.A..G.............C...........TA.....CGGGGCA---........G..A........C..T.........---..............G.....C..C...---........C..C........C.....T------------....T......................---------.....T...------C..............---.......C.------...T.......T.....G...........T.....G.....C...........C   [378]
Amphisbaenidae    		AACA.TT..........C..................---.....T...G.G.CGAC......C------------.....G......---...........C........T..C..A..C..GT.A..G..TCCG.G.---...AG...C...A.G..G.............C............A...A.CGGGGCA---........G..A........T............---..............G.....C..C...---........C..C......A.C......------------....T..........G...........---------.........------C.G............---.......C.------G..T.......G.....G...........G.....G.....C...........C   [378]
Trogonophidae     		AACA..T..........C.................T---..T..T...G.....AC......C------------.....G......---.....T.....C........T..C..A..C........C..TCCG.G.---...A....A...A.G..G.............C............A.....CGGGACA---........G..A........T.....C......---..............A.....C..C...---........C..C......A.C.....T------------....T......................---------.........------C..............---.......C.------G..T.......T.....G...........G.....G.....C...........C   [378]
Helodermatidae    		AACA.............C.................C---..G......G.G...AC......C------------.T.T.G......---...........C........T..C..T..C..G....TC..GCCG.G.---........C...A.G..G.............C...G..............CGGCGCA---........G...........C............---..............G..C..C..C...---........CA.C........C......------------....T...G...G......A.......CAC------......T..------C....G.........---.......C.------...T.............G...........G....GG.....C.....G.....C   [381]
Anguidae          		?????............C.................C---..G......G.G...AC......C------------.T.T.G......---.......................C.....T..G.....C..GCCG.G.---......T.C...A.G..G.............CA.................CGGCGCG---...........A........C............---..............G..C.....C...---........C..C.....T..C......------------....T...G...G......A.......CAC------......T..------C....G.........---.......C.------...T......G......G...........G..C.GG.....C...........C   [381]
Varanidae         		???A.............C.................C---.........G.G...AC......C------------.T.T.G......---........C..C........T..C.....T..G.....C.G.CCG.G.---........C...A.G..G.............CG..G..............CGCGGCC---........G...........C............---.........C..C.G..C..C..C...---........C..C........C......------------....T.......G......A.......CAC------......T..------C....G........G---.......C.------...G.............G...........G.....G.....C.....GG.G..C   [381]
Serpentes         		AACA.............C..................---.........G.G...AC......C------------.T...G......---....................T..C..A..C..G.......GTCCG.G.---........C...C.G..GG....A......A.......G...........CGGGGCA---........G........................---.........G....G..C..C..C...---........CA.C........C......------------..T.T.......A..G.C.A.......CACCACCAC......T.G------C..............---.....T.C.---TCC...T.............G........G..G.....G.....C...C....G..C   [390]
Leiocephalus      		AACA.............C.................C---..G......G.G...AC......C------------.T...G..T...---....................T..C..A..C..G.....C...CCG.G.---.C......A...A.G..G.............CG..G......T.......CGGCCCG---........G...........C............---..............G.....C..C...---........C..C......A.C......------------....T.......A.T....A.......CAC------......T..------C....G.........---.......C.------...T.............G.................G.....C...........C   [381]
Iguaninae         		AACA.............C.................C---..G......G.G...AC......C------------.T...G......---....................C........C..G.....C...CCG.G.---.C..........A.G..G.............CG..G..............CGGGCCC---........G...........C........G...---..............G..C..C..C...---........C..C........C......------------....T.......A......A.......CAC------......T..------C..............---.......C.------A..T.............G...........G.....G.....C...........C   [381]
Polyglyphanodon   		????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Macrocephalosaurus  	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Sineoamphisbaena       	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Aigialosauridae       	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Mosasauridae          	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Dolichosauridae        	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Adriosaurus            	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Pachyrhachis           	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Haasiophis             	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????

[JUN 7264-7593=330]
Sphenodontida     		GAGGGGTTTGCTGAAGGCTTCGTGAGGGCACTTGCAGAGCTGCACAACCAGAATACCATGCCC---AGTGTTACGTCGGCTGCCCAACCTGTTAACACAGGCATGGCACCTGTTTCCTCTATGGCTGGCACCAATGGCTTCAACGCTAACTTGCACAGCGAGCCTCCAGTGTATGCCAATCTCAGCAACTTCAACCCCAATACACTCCCCACAGCCCCCAGCTACAATGCAAACAGCATGGGCTACCCACCTCAGCATCATCTTAACCCCCAGATGCCAGTGCAGCATCCCCGGCTCCAAGCTCTGAAAGAAGAGCCTCAGACTGTGCCA   [327]
Dibamidae         		..A..A..............T..C..A..C..G........A.....T..A.....A......---........C..T........G...........T........C..A..C..T...........A.A............TT.CC.T........T..A........T........C...................G.G.....AA...G..A..A.A.........C....A.C.......T..T..G........C..G.............................T..T.............................C...   [327]
Gekkoninae        		..A........A........T..C..............A..A........A..C........A---.....C..T..T........G...........C........C.....C..A..A........A.A..G........CT..C.GT..A.....T.....G.....C........C..............T..A.....G...AA...G..A..T.A............T.A.T.......T..T........C---..A.............................C..T.....A..A........A...........C..G   [324]
Pygopodinae       		..A..A..............T..C..............A..A...........C...---------........T..T...A................G..G.....C.....C..G...........A.A......A....GT..C.G.........T...........T........C.......GT........A.....T...AA...G..A..T.A...........GT.A.T....A..T..T..G......---..A.............................C.....G..............A...........C...   [318]
Xantusiidae       		..A..C.................C.................A..T..T..A..C........T---........C..T.....T........G..TG........A.C.....C..G...........G.A...........G.T.C.GT........T..A........C........C........T...........C......AA....C.A..T.A..............ATC.......TG.T..A..A......T.G..T..T....................A..C..T.............................C...   [327]
Cordylidae        		..A.................T..C........C..............T..A..C..G......---........T..T.....T........G.....G........C.....C..G...........A.A.............A.C...........T..A........C........C........T............G.....AA......A..T.A......CA......A.C.......T..T..A...........G....................A.....A..C..T.............................C...   [327]
Scincidae         		..A.................T..CC................T........A..C.........---.A......C..T.....T........G.....T........C.....C..............A.A...........GT..C...........T........G..C........C........T..........GCG.....AATG.T.....A.A..............A.C.T.....T..T..A........C..G..............G..T........A..C..T.............................C...   [327]
Teiidae           		????????????????????????.....T..G..............T..A..C.........CCC.....C..C..A........G...ACA.....CA.......T.....C..T...........T.AT...........T..A..........CT........C..C........C........T..............C...AA....A.G..AGC......C..G....A.C..........T..A.....C---..G...........T..T..T.....C..A..C..T.....C.................A..A..C...   [327]
Lacertidae        		..A........C.....G..T..C.....G..G..G.................C.........CCC..C..C..C..C........G...TCA.....C......A.C..C..C..T..C........A.A...CA......GT..C....................G..C..C.....C....................CG.....AA...?..G..T........C..C.GT...T..A.......T..G..A.....C..G..............T...........T.....T..G..........................C...   [330]
Rhineuridae       		..A.................T..C.....G..A..............T..A..C........TCCC.....C..T..T........G...TCA.....C........C.....C..T...........A.A...........GT..C.......................C.....T...........T.....T....GCG....TAA......A..T.A...T..CA...G..A.C.......T..T..G..A........A..........................A..C..T.............................C..C   [330]
Bipedidae         		..A.................T..C........A........A.....T..A..C.........CCC.AC..C..CA.T........G...TCA..TC.T........C.....C..T..A........A.A...........GT..C.G.........T.....C..T..C........C........T.....T.....CG.T...AA...G..A..T.A.....G........A.C.......T..T..G..A.....C..C.G...T.....C..G...........T..C..T........T...........G........C...   [330]
Amphisbaenidae    		..A.................T..C.....G..A........A.....T..A..C.........CCC.A...C..CA.T........G...TCA..TC.T........C.....C..T..A........A.A...C.......GT....G.........T.....A..T..C........C........T.....T.....CG.G...AA......A..T.A..............A.C.......T..T..G..A........G.G...T.....C..............T..T..T........T...........A........C...   [330]
Trogonophidae     		..A.................T..C........A........A.....T..A..C.........CCC.A...C..CA.T........G...TCA..TC.T........C.....C..T..A........A.A......T....GT..C.G.........T.....A..T..C........C........T.....T.....CG.G...AA......A..T.A..T...........A.C.......T..T..G..A........G.G...T.....C..............T..C..T........T...........A........C...   [330]
Helodermatidae    		..A........C........T..C........A........A.....T..A..C........A---........C..T........G....CA.....C........C....CC..T...........A.A............T..C.G.........T...........C........C........T............G.....AGT..G..A..G........C..G....A.C.......TG.T..G..A.....C..G..............G.....A.....G..C..T.............................C...   [327]
Anguidae          		..A.................T..C........G..G...........T..A..C........G---........C..T........G....CA.....C........T.....C..T........?..A.A...........GT..C....................C..C.....T..C........T.....T..A..CG.....AGT..G..A..T........C......G..C.......TG.T..G..A.....C..G..T...........G...........G..C..T.............................C...   [327]
Varanidae         		..A.................T..C......T.A........A.....T..A..C........A---.....C..C..T.............CA..T..C........C..A..C..............A.A...C..T....GT..C...........T...........T........C....A...T..T.....T...G.....AGT..G..G..T................A.C.......TG.T..A..A.....C..G..T........T..............A..C..T.............................C...   [327]
Serpentes         		..A..C..............T..C........A........A.....T.....C........A---........C..T.....T......ACG...T.G........T.....A..T..C........A.A..G........GT..C.G...............A..C..C.....T..C.....T..T.....T..T.GCG.....AAT....TG..TTC..............A.C......TT..T..A..A........G..........................G..C................................C..T   [327]
Leiocephalus      		..A.................T..C.....T...........A.....T.....C..T.....A---........C..C........G....CA.....T........C..A..C..T..A........A.A...........GT..C....................C..C.................T...........C.GT...AGT.....A..T.A.....C........A.C.A........T..G..A..C.....G.....T..............A........C..T.............................C...   [327]
Iguaninae         		..A.................T..C.....T...........A.....T..A..C........A---........C..T........G....CG.....T........C.....C..T..A........A.A...........GT..C.......................C........C........T...........C..C...A.T..G..G..T.A.....C........A.C.......T..T..G..A......T.G.....T........G..............C..T.............................C...   [327]
Polyglyphanodon   		??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Macrocephalosaurus  	??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Sineoamphisbaena       	??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Aigialosauridae       	??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Mosasauridae          	??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Dolichosauridae        	??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Adriosaurus            	??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Pachyrhachis           	??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Haasiophis             	??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????

[Enol 7594-7674=81]
Sphenodontida     		?????????????????????????????????????????????????????????????????????????????????   [81]
Dibamidae         		?????????????????????????????????????????????????????????????????????????????????   [81]
Gekkoninae        		CGATACATCACTGGGGAGAAGCTGGGGGAGCTTTACCAGAGCTTCATCAAGAACTACCCCGTGGTCTCCATCGAGGACCCT   [81]
Pygopodinae       		?????????????????????????????????????????????????????????????????????????????????   [81]
Xantusiidae       		CGCTACATCTCTGCCGACGAACTGGGAGACCTCTACCAGAGCTTTGTGCGGGACTACCCAGTGGTATCCATCGAGGACCCC   [81]
Cordylidae        		?????????????????????????????????????????????????????????????????????????????????   [81]
Scincidae         		CGCTACATCTCGGCAGATGAACTAGGCGACCTGTACCAGAGCTTTGTACGGGACTACCCAGTGGTGTCAATTGAGGATCCT   [81]
Teiidae           		CGCTACATCACTGCTGATGAGCTGGGTGACCTCTACCAAAGCTTTGTACGAGACTACCCAGTGGTATCAATTGAGGATCCT   [81]
Lacertidae        		CGTTACATCTCCGCTGATGAACTGGGAGACCT?TACCAAAGCTTTGTAAGGGATTACCCTGTGGTGTCGATTGAGGATCCT   [81]
Rhineuridae       		CGCTACATCTCTGCTGATGAACTGGGTGATCTCTACCAAAGCTTTGTAAGGGACTACCCAGTGGTGTCAATTGAGGATCCT   [81]
Bipedidae         		CGCTACATCTCTGCTGATGAACTGGGGGACCTGTACCAAAGCTTTGTAAGGCACTACCCAGTGGTATCCATTGAAGATCCT   [81]
Amphisbaenidae    		CGCTACATCTCTGCTGACGAACTGGGTGACCTGTACCAAAGCTTTGTAAGGGACTACCCAGTGGTATCCATTGAAGATCCT   [81]
Trogonophidae     		CGCTACATCTCTGCAGATGAGCTGGGTGACCTGTACCAAAGCTTTGTAAGGGACTACCCAGTGGTATCAATTGAAGATCCT   [81]
Helodermatidae    		CGCTACATCTCTGCTGACGAACTGGGTGACCTCTACCAGAGCTTTGTGCGGGACTACCCAGTGGTGTCAATTGAGGATCCT   [81]
Anguidae          		CGTTATATCTCTGCTGATGAACTGGGTGACCTCTACCAGAGCTTTGTGCGGGACTACCCAGTGGTGTCAATTGAGGATCCT   [81]
Varanidae         		CGCTATATCACTTCTGATGAACTGGGTGACCTCTACCAGAGCTTTGTGTGGGACTACCCAGTGGTGTCAATTGAGG?????   [81]
Serpentes         		CGTTACATCTCTGCTGATGAATTGGGTGACCTCTATCAGAGCTTTGTACGGGACTATCCAGTGGTGTCCATTGAGGATCC?   [81]
Leiocephalus      		CGCTATATCTCTGCCGATGAGCTGGGGGACCTCTATCAGAGCTTTGTTCGGGACTATCCAGTGGTGTCAATTGAGGACCCC   [81]
Iguaninae         		CGCTACATCTCTGCTGATGAGCTGGGTGACCTCTACCAGAGCTT?GTTCGGGACTATCCAGTGGTGTCAATTGAGGATCCT   [81]
Polyglyphanodon   		????????????????????????????????????????????????????????????????????????????????? 
Macrocephalosaurus  	????????????????????????????????????????????????????????????????????????????????? 
Sineoamphisbaena       	????????????????????????????????????????????????????????????????????????????????? 
Aigialosauridae       	????????????????????????????????????????????????????????????????????????????????? 
Mosasauridae          	????????????????????????????????????????????????????????????????????????????????? 
Dolichosauridae        	????????????????????????????????????????????????????????????????????????????????? 
Adriosaurus            	????????????????????????????????????????????????????????????????????????????????? 
Pachyrhachis           	????????????????????????????????????????????????????????????????????????????????? 
Haasiophis             	????????????????????????????????????????????????????????????????????????????????? 

[Amel 7675-8010 = 336]
Sphenodontida     		???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AACCAGCCAATTTTCCCACATCCAGCTGGGAACCCAGGCTTTTCAATGTTCCCCTCCGGGACACAGCCAATGTTCCCTCTGCCACCACTTCTGCCAGACATGCCTCTGGAACCATGGC???????????   [336]
Dibamidae        	 	ATGGGAGGATGGATGCACGGACCAATGATGCCTCATCAAACTCTCTATCCAGGCCCTCATCATATGCCCCTTCA?CAAATGCATCAACCG------------------------CAAGTACCACTTGTGCCT---------GGGCAAAACACA---ATGCCACAGTTCCACACCCTGGGAGGAGTTCTACACATTCCACATGTAGGAG.G..A.....GC.A..C..G.A.C.A...C.T...AA.CA.G.....CCA...C.A....AT..A.....A.A..AA.........A.GT.......TC..................AACCAGCAGAA   [300]
Gekkoninae        		ATGGGAGGATGGATGCACGGGCCAATGATGCCTCACCACTCTCCTTATCCAGGTTTCCAGCAAATCCATCCCCACCAAATGCATCCCACACCACTGCAACCAGCTGGG------CACGCCCCTTTTGGTCAAATGCCT---GGACACAACACA---ATGCCACACTACCCG------GGAGTAGTTCAAAACCTTCCACATGCAGGAG.G.TT..TGGGCA..AC..G.AGC.......T...AA.CACC.....------C.T..CGGT.....C....A.............G.GA.A.AT..TGCT.....T..........CAGGAACAGAC   [312]
Pygopodinae       		ATGGCAGGATGGATGCACGGACCACAGATGTCTCACCACCTTCCTTTTCTAGGCTTCCAGCAAACTCATTCCCACCAAATGAATCCCACTCCCATGCAACCAGCTGGG------CATAGCCCTTTTGGTCAA------------------------ATGCCACATTACCAG------GGAGTAGTTCAACACCTGTCAAATGCCGGAG.GA.T..TG.GCAT.AC..G.A.C.......T...CA.CAGC.....------C.T...CAT..........AT............T.GA.A.AT..T.CT.....T..........CAGGAACAGAC   [294]
Xantusiidae       		ATGGGAGGATGGATGCATGGACCAGTGATGCATCAGCAACCATTCTATCAAAGCCACCATACTGTGCACCTCCATGTGCAGAACCCACCATCAATGCAGCATCCTAGC------CATATGCCAATTGTGCCAATGACT---GGACCACACCCAGGAAGCCCTCACTATCCAAGCCCAGTAGGAGGTCAACATCTGCCACATATAGGAG....AATTCC..AT.AC..G.AGC.A..TC.TT..A..CCAC.....CAA...C.A..ACAT........AAA...A.........G.GA.C.....TT.......T..........CACCAGCGGAC   [327]
Cordylidae        		ATGGGAGGATGGATGCACGGGCCAATGACACCTCAACAAGCTTTCTATCAAATCCACCCTCCAATGCATCTCCATCAAATGCATCAACCACCAATACAACAGCCTGCA------TCTATCCCATTTGTACCAATGGCT---GGGCAAAACCCAATAAATCCACATTATCAA------GCAGGAGTTCAACATCTCCCACATACAGGAGGG..C.....GC.......G.A.C.A.TTC.T...AA..CAC.....CAT...C.A..A.TT.......GTGA...AA........G.GA.C.....TT.......T..........CACCAGCAGAC   [321]
Scincidae         		CTTGGAGGATGGATGCGTGGGCCAATGCTGCCTCAGCAAAATTTCTTTCCA------------ATGCAACTCCATCAACTGCATCCACCATCAATGCAACAACCA---------CATGGCCCATTTGGGCCAATGCCT---GGGCAAAATTCGCTAAATCCACACTATCAAGTTCAAGCAGGAGCCCACCATCTTCCACACACAGGAG...TC.....GCAG..C..G.A.C.A.ATC.TT..AA.CACC....ACAA...C.A.CT.AT........A.A...A.........G.GA.C.....T........T..........GACCAGTAGAC   [312]
Teiidae           		ATGGCAGGTTGGATTCAGGGACCAATGATG---CACCATCCCCATTTTCAG------------ATGCACCTTCAACAAGCACACCCACCACCAATGTCACAACCTGCG------CATAATGGATTTGGGCCTATGCCT---GGGCAAAATACA---ATGCCACAGTATCATGGTCAA---------CAATATCCTCCACA?GTAGGAG.G..T....CCCA...C....A.C.A.CA..TGG.ATTCAGC.TC.ACAT...A.A..A.AT..........AT..AA....C..CG.GA.T.....T.CA..C..T...A......CACCAGCTGAC   [300]
Lacertidae        		ATGGGAGGATGGATGCACGGGCCAACGATG---CACCAAAGTCATTATCCA------------ATGCACCTCCATCAAATGTCGCAACCATCGATGCAGCAACCTGGCTATGCTCATAGCCCATTTGTCCCAATGACT---GGGCAAAACACAATCATGCCACAGTATCAAGGTCATGTGGGAGTTCATCAA------CATGCAGGAG.G..C.....GCAT..C.TGT..C.AA.C.GT...AA.CAAC.....CA...AC.A....AT..........A...A.....T...G.GA.A.....T.C...G..T...T......CACCAGCTGAC   [312]
Rhineuridae       		ATGGGGGGATGGTTGCACGGACCAATGACG---CACCAAACTCATTTCCAA------------ATTCAGCTCCATCAAATGCAGCCACCACAAATGCAACAACCTGGG------CATAATCCATTTGTGCCAATGACTGGTGGGCAAAACACAATAATGCCACAGTATCAAGGTCAGGCAGGAGTTCAACATCTTCCACATGCAGGGG.G..T.....GCA...CTTG.A.C.A.CA.GT..CAATCAGC.....CA....C......AT..........A...A.....T.....GA.C.....T.CA.....T...T......CAGCAGTTGAT   [315]
Bipedidae         		ATGGGAGGATGGATGCACGGGCCAGTGATG---CCCCAGTCCCACTTCCAA------------GTGCACCTCCATCAAATGCAGCCACCACCAATGCAACAACCATCC------CATAGTCCATTTCTACCAGTGCCT---GGGCAAAACACAATAATGCCACACTATCAAAGTCAGGCAGGAGTTCAACACCTTCCACATGCAGGAG.GT.T.....GCA...C.CA.AGCA.....G...TAATCAGC.....CA......A..ACAT..A...GG.CAA..A.....T...G.GA.C.....T.CA.....T...T......CACACATGGAC   [312]
Amphisbaenidae    		ATGGGAGGATGGATGCACGGGCCAGTGATG---CCCCAACCCCATTTCCAA------------GTGCACCTCCATCAAATGCAGCCACCACCAATGCAACAACCATCC------CATGGTCAATTTCTACCAATGCCT---GGGCAAAACACAATAATCCCACACTATCAAAGTCAGGCAGGAGCTCAACACCTTCCACATGCAGGAG.GT.C...G.GCA.....C..AGCAC....G....AATCAGC.....CA......T..ACAT..A...GGACAG.AA..T..T...G.GA.......T.CA.....TC.GT......CTCAGCCCGAC   [312]
Trogonophidae     		ATGGGAGGATGGATGCACGGGCCAGTGATG---CCCCAAACCCACTTCCAA------------GTGCACATCCATCAAATGCAGCCACCACCAATGCAACAACCATCC------CATAGTCCATTTCTACCAATGCCT---GGGCAAAACACATTAGTGCCACACTATCAAAGTCAAGCAGGACCTCAACACCTTCCACATGCAGGAG.GT.C...GCGCA.....CA.AGCA.....G....AATCAGC.....CA....C.T..ACAT..AT..GGAC.G..AA....T...G.GA.C.....T.CA.....TC..T......CACAAACCGAC   [312]
Helodermatidae    		ATGGGAGGATGGATGCACGGGCCAGTGATG---CACCAAACTCACTTTCAAGGGCTCCATCCCATGCACCTCCATCAAATGCAGCCACCACACATGCAGCAGCCTGGG------CATAACTCATTTGGGCCAATGACT---GGACAAAATACATTAATGCCACACTATCAAGCTCACGCAGGAGTCCAACATCCTCCACATGCGGGAG.GT.C.....GCA...C....A.C.A.........AATCAGC.....CA...TC.A....AT..........AT..A.....T.....GA.C.....T.CA.....T...T......CACCGGCTGAC   [324]
Anguidae          		ATGGGAGGATGGATGCACGGGCCAATGATG---CACCAACCTCACTTTCCAGGGTCCCATCCAGTGCACCTCCATCAAATGCAGCCCCCACACATGCAGCAGCCTGGG------CATAACTCATACGGGCCAATGTCT---GGACATAATACGTTAATGCCACACTACCCAGCTCATGCAGGAGGCCAACATCTTCCAGACACAGGA------------------------C.A.........AATCAGC.....CAT..TC.A....AT..........AT..A.....T.....GAAC.....T.CA.....T.....T....AACCGGCTGAC   [300]
Varanidae         		ATGGGAGGATGGATGCATGGGCCAATGATC---CACCAAACTCATTTTCAAGGGCTCCATCCAATGCATCTCCACCAAATGCAGCCACCACAGATGCAGCAACCTGGG------CATAGCCCATTCGTGCCAATGACT---GGGCAAAACAATGTAATACCGCACTATCAAACTCATGCAGGAGCCCAACATCTCCCACATGCAGGAG.G..C...G.GCAG..C.CG...C.A.........AATCA.C.C..T.AT...C.A....AT..........AT..A.....T...T.AA.C.....T.CA.....T...T.G....CA---GTAGAC   [321]
Serpentes         		ATGGGAGGATGGATGCACGGGCCAGTGATA---CACCCAACCCATTTTCATGGGGTCCATGCAATGCACCTCCATCCAATGCAGCCACCACATTTGCAGCAACCTGGC------CATAACCCATTTATCCCAATAACT---GGGCATAACCCATTAATTCCACACTATCAG------------ATACAACATCTTCAGCAAGCAGGAG.G..T.....G---------.AGC.A.T...T...AA.CAA...G..CA...TC.A..A.GT.....C..A.AT..A..A..T......A.C.....T.C......T...T......CA---GCTGAC   [300]
Leiocephalus      		ATGGGAGGATGGATGCACGGACCAATGGTG---CACCAGACTTCATTTCAAAGCGTTCCTTCAGTGCACCTCCATCAAATACAGCCACCACAAATGCACCAACCTGGG------CACAGCGGATTTGTGCCACTACCT---GGTCATAATACATTGATGCCCCACTTTCAAGGTCATGGAGCAGTTCAACAACTTCCGCATGCGGGAG.A..C.....GCA...C..G.A.C.A..A..T...AT.CACC....AAG...TC.A.CA.TGTCA...C.C.A...A.........T.GA.C.....T.CA...G.T...G......CACCAGCTGAC   [324]
Iguaninae         		ATGGGAGGATGGATGCGCGGACCAATGATG---CACCAAACTCACATTCAAAGTCTTCCTCCAATGCACGTCCATCATATGCAGCCACCACAAATGCCACAACCAGGG------CACAACACATTTGTGTCACTGCCT---GGTCAAAATGCATTGATGCCGCAGTTTCAAGCTCATGGAGGA---------CTTCCACAAATAGGAG.A..C....CGCA.T.C..G.A.CA......T...AC.CAGC....CCA..GTC.A.AA.AT.CA.......A...AT.T......G.GA.C.......CA.....T...T.G....CAGCAGCTGAC   [315]
Polyglyphanodon   		????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Macrocephalosaurus  	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Sineoamphisbaena       	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Aigialosauridae       	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Mosasauridae          	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Dolichosauridae        	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Adriosaurus            	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Pachyrhachis           	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Haasiophis             	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????

[MAFB 8011-8334 = 324]
Sphenodontida     		????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????   [324]
Dibamidae         		????????????????????????????????????????????????GAAGACGCGGTGGAGGCGCTCATCGGGTCCCACCAAGTGCCCCAGCAGCTGCAGAGCTTCGAGAGCTTCAGACAGTATGCGGGGGTCACTCACGAAGACCTGGCGGGCAGCGGGCACCCTCACCACCAGGCGTCTCCCACCCCTTCCACTGCCTCCAGCTCCTCCCAGCAGCTACAG------------------ACGCACAGCAGTGTGGAGGACAGGTTCTCCGATGACCAGCTGGTGTCCATGTCCGTGCGAGAGCTCAACAGGCACCTGAGG   [306]
Gekkoninae        		GCCAACAGCTACCAGCAGATGAATCCGGAGACCCTCAACCTCACCCCGGAGGACGCGGTGGAAGCCCTCATCGGGCCCCACCAAGTGCCCCAGCCGCTCCAGAGCTTCGAGAGCTTCCGGCAGTATGGCGGGGTCACCCACGAAGACCTGGCCGGCCCGGGGCACCCGCACCACCAGGCGTCTCCCACCCCATCGACCGCCTCCAGCTCCTCCCAGCAGCTCCCCAACACGCACCAG------CCGCACAGCAGCGTGGAGGACAGGTTCTCGGACGACCAGCTGGTCTCCATGTCCGTGCGCGAGCTCAACCGG?ACTTGAGG   [318]
Pygopodinae       		GCCAACAGCTACCAGCAGATGAACCCGGAGACGCTCAACCTCACCCCGGAGGACGCGGTGGAAGCCCTCATCGGGCCCCACCAAGTGGCCCAGCCGCTCCAGAGCTTCGAGAGCTTCCGGCAGTACGGCGGGGTCACCCACGAAGACCTGGCCGGCCCGGGACACCCGCACCACCAGGCGTCTCCCACCCCTTCCACCGCCTCCAGCTCCTCCCAGCAGCTACCGAACACGCACCAG------CCGCACAGCAGCGTGGAGGACAGGTTCTCGGATGATCAGCTGGTCTCCATGTCCGTGAGGGAGCTCAACCGGCACCTGAGG   [318]
Xantusiidae       		GCCAACAGCTACCAGCAGATGAACCCGGAGACGCTCAACCTCACCCCCGAGGACGCCGTCGAAGCTCTGATCGGCTCCCACCAAGTGCCCCAGCAGCTCCAGAGTTTCGAGAGCTTCAGACAGTACGGCGGGGTCACACACGAAGAGCTGACGGGCAACGGGCACCCACATCACCAGGCATCTCCTACGCCTTCCACTGCTTCCAACTCCTCCCAACAGCTCCAGAACCCGCACCAG------GCGCACAGCAGCGTGGAAGACAGGTTCTCCGATGACCAGCTGGTGTCCATGTCCGTGAGAGAGCTCAACAGGCACCTGAGG   [318]
Cordylidae        		?????????????????GATGAACCCCGAGGCGCTCAACCTCACCCCGGAGGACGCGGTGGAGGCGCTGATCGGGTCCCACCAAGTGCCCCAGCAGCTGCAGAGTTTCGAGAGCTTCCGGCAGTACCCCGGCGTCACCCACGAAGACCTCTCGGGCAATGGGCACCCGCATCACCAGGCGTCCCCGACCCCTTCCAACGCCTCCAGCG?TTCCCAGCAGCTACAG---ACGCACCAG------CCGCACAGCAG?GTGGAGGACAG??????????????????????????????????????????????????????????   [315]
Scincidae         		GCCAACAGCTACCAGCAGATGAACCCGGAGGCGCTCAATCTTACCCCGGAGGACGCGGTGGAAGCCCTCATAGGGTCCCACCAAGTGCCCCAGCAGCTCCAGAGCTTCGAGAGCTTCCGGCAGTATGGACCGGTCCCCCACGAAGACCTGTCCGCCAACGGGCACCCACATCACCAGGCGTCTCCTACCCCTTCCACCGCCTCCAGCTCCTCCCAGCAGTTACAGAACACGCACCAA------CCGCATAGCAGCGTGGAGGACAGGTTCTCGGATGACCAGCTGGTCTCCATGTCCGTGCGAGAGCTCAACAGGCACCTGAGG   [318]
Teiidae           		GCCAACGGCTACCAGCAGATGAACCCGGAGGCCCTCAACCTTACCCCAGAAGATGCCGTGGAAGCCCTCATCGGCTCTCATCCGGTGCCCCAGCAGCTCCAGGGCTTTGACAGCTTCCGGCAATACGCAGGGGTCACCCATGAAGACCTGTCTGGCAACGGGCATCCTCATCTCCAGGCGTCTCCGACCCCTTCCACCGCCTCCAACTCCTCCCAGCAGCTCCAGAACTCGCACCAG------CCTCACAGCAGCGTGGAGGACCGGTTCTCCGATGACCAGCTGGTGTCCATGTCCGTGCGAGAGCTCAACCGGCACCTGCGG   [318]
Lacertidae        		GCCAACAGCTACCAGCAGATGAACCCGGAGACGCTCAACCTCACCCCGGAGGACGCGGTGGAAGCCCTCATCGGGTCCCACCAGGTGCCTCAGCAGCTCCAGGGCTTCGAGAGCTTCCGGCAGTACACCGGGGTCCCCCACGAAGACCTGTCGGGCAACGGGCACCCTCATCACCAGGCGTCGCCCACCCCTTCCAACGCCTCCAGCTCCTCCCAGCAGCTCCAGAACACGCACCAG------CCTCACAGCAGCGTGGAAGACCGGTTCTCCGACGACCAGCTGGTGTCCATGTCCGTGCGGGAGCTCAACCGGCACCTGAGA   [318]
Rhineuridae       		GCTAACAGCTACCAGCAGATGAACCCGGAGGCGCTCAACCTCACCCCAGAGGACGCAGTGGAAGCCCTCATCGGGTCCCACCAAGTGCCCCAGCAGCTCCAGGGCTTCGAGAGCTTCAGGCAGTACGCGGGGGTCACCCACGAAGACCTGTCCGGCAACGGACACCCTCATCACCAGGCCTCCCCGACCCCTTCCACTGCCTCCAGCTCCTCCCAGCAGCTCCAGAACCCGCACCAG------CCTCACAGCAGCGTGGAGGACAGGTTCTCCGATGACCAGCTGGTCTCCATGTCGGTGCGAGAGCTCAATCGGCACCTGAGG   [318]
Bipedidae         		GCTAGCAGCTACCAACAGATGAATCCTGAAACGCTCAACCTCACCCCGGAGGACGCGGTGGAAGCCCTCATCGGGTCCCACCAAGTGCCCCAGCAGCTGCAGGGCTTTGAGAGCTTCAGGCAGTATGCGGGGGTCACCCACGAAGACCTGTCCGGCAATGGACATCCTCACCACCAGGCGTCCCCGACCCCTTCCAACGCCTCCACCTCCTCTCAGCAGCTCCAGAACACGCACCAG------CCTCACAGCAGTGTGGAGGACAGGTTCTCCGACGACCAGCTGGTCTCCATGTCTGTTCGGGAGCTCAATCGGCACCTGCGG   [318]
Amphisbaenidae    		GCTAGCAGCTACCAACAGATGAATCCCGAGGCGCTCAACCTCACCCCTGAGGACGCGGTGGAAGCCCTCATCGGGTCCCACCAAGTGCCCCAGCAGCTGCAGGGCTTCGAGAGCTTCAGGCAATATGCGGGCGTCACCCACGAAGACCTGTCCAGCAATGGACATCCTCACCACCAGGCGTCCCCGACTCCTTCCAACGCCTCCACCTCCTCTCAGCAGCTCCAGAACACGCACCAG------CCTCACAGCAGTGTGGAGGACAGGTTCTCCGACGACCAGCTGGTCTCCATGTCGGTTCGGGAGCTCAATCGGCACCTGAGG   [318]
Trogonophidae     		GCTAGCAGCTACCTACAGATGAATCCCGAGGCGCTCAACCTCACCCCGGAGGACGCGGTGGAAGCCCTCATCGGGTCCCACCAAGTGCCCCAGCAGCTGCAGGGCTTCGAGAGCTTCAGGCAGTATGCAGGGGTCACCCACGAAGACCTGTCGGGCAATGGACATCCTCACCACCAAGTGTCCCCGACCCCTTCCAACGCCTCCACCTCCTCTCAGCAGCTCCAGAACACGCACCAG------CCTCACAGCAGTGTGGAGGACAGGTTCTCCGACGACCAGCTGGTCTCCATGTCGGTTCGGGAGCTCAATCGGCACCTGCGG   [318]
Helodermatidae    		????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????CAGTACCCCGGGGTCACCCACGAAGACCTGTCCGGCAGCGGGCACCCCCCCCACCAGGCGTCTCCGACCCCTTCCAGCGCCTCCAGCTCCTCCCAGCAGCTCCAGAACACGCATCAG------CCTCACAGCAGCGTGGAGGACAGGTTCTCGGATGACCAGCTGGTCTCCATGTCGGTTCGAGAGCTTAACCGGCACCTGAGG   [318]
Anguidae          		GCCAACAGCTACCAGCAGATGAACCCCGAGGCGCTCAACCTCACCCCGGAGGACGCGGTGGAAGCCCTCATCGGCGCCCACCAGGTGCCCCAGCAGCTCCAGAGCTTCGAGAGCTTCCGGCAGTATGCCGGGGTCACCCACGAAGACCTGTCCGGCAACGGGCACCCTCACCACCAGGCGTCTCCGACCCCTTCCAACGCCTCCAGCTCCTCCCAGCAGCTCCAGAACACGCATCAG------CCTCACAGCAGCGTGGAGGACAGGTTCTCCGATGACCAGCTGGTCTCCATGTCGGTGCGAGAGCTTAACCGGCACCTGAGG   [318]
Varanidae         		GCCAACAGCTACCAGCAGATGAACCCTGAGGCCCTCAACCTCACTCCAGAAGACGCGGTGGAAGCCCTCATCAGCGCCCACCAGGTGCCCCAGCAGCTCCAGAGTTTCGAGAGTTTCCGGCAGTATGCAGGAGTCACCCATGAAGACCTGTCCGGCAATGGGCACCCCCACCACCAGGCGTCTCCTACCCCTTCCACTGCCTCCAGCTCCTCCCAGCAGCTCCAGAACACGCATCAG------CCTCATAGCAGCGTGGAGGACAGGTTCTCAGATGACCAGCTGGTCTCCATGTCGGTGAGAGAGCTTAATCGGCACCTGAGG   [318]
Serpentes         		GCCAACAGCTACCAGCAGATGAATCCGGAGGCGCTCAACCTCACGCCGGAGGACGCCGTGGAAGCCCTGATCGGGTCCCACCAAGTGCCCCAGCAGCTCCAGAGCTTCGAGAGCTTCCGGCAGTACGGAGGGGTCCCCCACGAAGACCTGTCTGGCCCTGGGCACCCGCATCACCAGGCCTCTCCTACCCCCTCCACTGCTTCCAGTTCATCCCAGCAGCTGCAGAACACGCACCCT------CCTCACAGCAGCGTGGAGGACCGGTTTTCCGACGACCAGCTGGTCTCCATGTCGGTGCGAGAGCTCAACAGGCACCTGAGG   [318]
Leiocephalus      		GCCAACACTTACCAGCAGATGAACCCGGAGACGCTCAATCTCACCCCGGAGGACGCCGTGGAAGCCCTCATAGGGTCCCATCAGGTCCCGCAGCAGCTCCAGAGCTTCGAGAGCTTCCGGCAGTACGCTGGGGTCACCCACGAAGACTTGTCCGGCAACGGGCACCCGCATCACCAACTCTCCCCTAGCCCTTCCACCGCCTCCAGCCCCTCTCAGCAACTCCAGAACACTCACCAGCACCAGCCTCACAGCAGCGTGGAGGACCGGTTTTCCGATGACCAGCTGGTCTCCATGTCCGTGCGGGAGCTGAACCGGCACCTGAGG   [324]
Iguaninae         		GCCAACACTTACCAGCAGATGAACCCGGAGGCGCTCAACCTCACCCCGGAGGACGCGGTGGAAGCCCTCATCGGGTCCCACCAGGTCCCCCAGCAGCTCCAGAGCTTCGAGAGCTTCCGGCAGTACCCCGGGGTCACCCACGAAGACTTGGCCGGCAACGGGCACCCGCATCATCAGGCCTCTCCTACCCCTTCCACCGCCTCCAGCTCCTCCCAGCAGCTCCAGAACACGCACCAGCACCAGCCGCACAGCAGCGTGGAGGACCGGTTCTCCGATGACCAGCTGGTCTCCATGTCCGTGCGGGAGCTGAACCGGCACCTGAGG   [324]
Polyglyphanodon   		????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Macrocephalosaurus  	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Sineoamphisbaena       	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Aigialosauridae       	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Mosasauridae          	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Dolichosauridae        	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Adriosaurus            	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Pachyrhachis           	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
Haasiophis             	????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????
;
END;


BEGIN ASSUMPTIONS;

	[this says the default type is all characters are unordered]
	OPTIONS  DEFTYPE=unord; 
	
	[This defines a typeset called MorphoclineOrdered, where characters that form a linear morphocline are ordered, and others unordered]
	TYPESET  MorphoclineOrdered  = ord: 55 63 67-70 83 94 124 134 152-153 157;
	
END;

BEGIN SETS;

	[these define sets of characters for easy inclusion/exclusion]
	
	CHARSET  morph = 1-248;
	CHARSET  Nuclear = 2143-8334;	
	CHARSET  Mito_Alignable = 249-323 362-374 384-405 411-415 423-434 445-496 506-518 533-545 554-584 595-606 612-1562 1668-1680 1693-1724 1733-1744 1757-1768 1777-1826 1835-1859 1867-1889 1899-1911 1948-1960 1972-1976 1983-1999 2016-2022 2036-2047 2056-2060 2066-2087 2096-2109 2119-2142;
	CHARSET  Mito_unalignable  = 324-361 375-383 406-410 416-422 435-444 497-505 519-532 546-553 585-594 607-611 1563-1667 1681-1692 1725-1732 1745-1756 1769-1776 1827-1834 1860-1866 1890-1898 1912-1947 1961-1971 1977-1982 2000-2015 2023-2035 2048-2055 2061-2065 2088-2095 2110-2118;

	[these define sets of taxa for easy inclusion/exclusion]

	TAXSET fossils = Polyglyphanodon Macrocephalosaurus Sineoamphisbaena  Aigialosauridae Mosasauridae Dolichosauridae Adriosaurus Pachyrhachis Haasiophis;

END;

BEGIN PAUP;

	[This defines an outgroup; you can have more than 1 outgroup]
	
	OUTGROUP Sphenodontida ;

	[This sets various parameters for PAUP, e.g. maximum number of trees to hold in memory, how to show trees etc]

	SET MAXTREES=10000 ROOT=OUTGROUP CRITERION=parsimony tcompress=yes torder=left showtaxnum=yes taxlabels=full;

END;