Insert ALT tag here The University of Adelaide Australia
General Practice Home
Current Research Programs Home
Clinical Trials
Respiratory Health
Grief and Palliative Care
Mental Health
Cardiovascular Disease
Health Informatics
Past Research Programs

text zoom: S | M | L

Further Enquiries:
Discipline of General Practice
THE UNIVERSITY OF ADELAIDE SA 5005
AUSTRALIA
Email

Telephone: +61 8 8303 3460
Facsimile: +61 8 8303 3511

 

You are here: Discipline of General Practice > Health Informatics
Printer Friendly Version

Current Research Programs - Health Informatics


MOCHA - GP Cardiovascular Risk Assessment Software Tool
Medic-GP: Current Investigations
General Practice (GP) Vocabulary Project
Introduction to Drug Dose-Forms in the Poly-browser and Authoring Tool (PAT)
AMDT Demo 4


MOCHA - GP Cardiovascular Risk Assessment Software Tool

The MOCHA (Modifying Clinical Heart Activities) project is funded by Alphapharm Pty Ltd and is being developed by the Department of General Practice, the University of Adelaide. Funding commenced in October 2003 and the project is due for completion in June 2005.

Project deliverables are as follows:

  1. Development of a prototype cardiovascular risk assessment and disease management tool and accompanying products and documentation;
  2. Usability and acceptability testing of the product with general practitioners and consumers;
  3. Production of a demonstration version of the software which integrates with GP clinical software systems.

Description and aim of MOCHA

MOCHA is an integrated information-communication technology program that aims to enhance existing clinical software systems to improve disease management of cardiovascular risk. Cardiovascular disease remains a major cause of disease burden in developing and developed regions and disease management has increasingly been discussed as a means of curtailing health care costs and improving patient outcomes.

The conceptual basis for the program is one of ‘patient-centered’ care which is about sharing management between patient and doctor and includes the key principles of communication with patients; partnerships and a focus beyond specific conditions, on health promotion and healthy lifestyles. Key features include goal setting, written management plans and regular follow-up.There is evidence that such an approach improves management for cardiovascular disease. Additional studies that focus on the use of computer based clinical decision support systems (eg. standalone risk calculators), have demonstrated that a combined approach to integrate both risk estimation and management recommendations may be required to be of benefit to patients and patient outcomes. Stand-alone cardiovascular risk estimation in primary care utilising computer based clinical decision support systems, is no more likely to reduce the cardiovascular risk in patients than patients receiving usual care.

Software development

Initial software development focused on utilising the Framingham coronary heart disease risk function derived from observational studies of the original Framingham cohort. Functionality during this phase of the software development concentrated particularly in emulating the functionality of disseminated Framingham algorithms, which generate the absolute risk of having a cardiovascular event for individual patients – demonstrated to Alphapharm Pty Ltd as an online HTML risk calculator. In assessing the functionality of the risk calculator for MOCHA, the development team made comparisons against other computerised risk calculators and the de-facto standard utilised in the Australian primary care environment i.e. the National Prescribing Service (NPS) paper-based New Zealand Cardiovascular Risk Calculator.

Further development concentrated on re-orientating cardiovascular risk calculator within a broader framework for the management of hypertension and cardiovascular risk management. Australian hypertension management guidelines have recently been updated (Hypertension Management Guide for Doctors; National Heart Foundation, 2004) and these were used as the basis for developing a systematic computerised approach to the management of hypertension.

In particular, a toolkit was developed which can be used in a clinical consultation directly with patients; the interface can guide a patient and general practitioner through management of hypertension, the reasons for undertaking such a management pathway and the role of risk factors that modulate management. Hyperlinks within the screens, provide an additional educational mechanism that allows patient access to additional information or as a prompt for general practitioners.

A paper and presentation has been presented at the International Conference on Qualitative Research in IT & IT in Qualitative Research in late 2004 by Dr Anne Wilson and Andre Duszynski.

Evaluation of the acceptability of a computerised primary health care framework for the assessment and management of cardiovascular risk. A Wilson, A Duszynski, A Ly, D Turnbull, J Beilby. Published in Proceedings of QualIT2004: International Conference on Qualitative Research in IT & IT in Qualitative Research: Brisbane 2004.

(PDF Document, requires Adobe Acrobat Reader)

Note: To save PDF documents above, hold down right mouse-button and select "Save Link As..."

For further information please contact:

Andre Duszynski
Phone: (08) 8303 6269
andre.duszynski@adelaide.edu.au

back to top


Medic-GP: Current Investigations

Pharmacovigilance: Exploratory study using a record-linkage database (Medic-GP) to examine drug safety in Australia, with cefaclor as an example.

Study objectives:
  • To establish a profile of patients experiencing serum sickness-like reaction (SSLR) to cefaclor
  • To characterise incidence of SSLR to cefaclor in specific age groups
  • To conduct a case-control assessment and establish risk factors in development of SSLR in patients prescribed cefaclor
  • To conduct a comparative study (using another antibiotic as a comparator) to establish whether an association exists between cefaclor prescription and development of SSL

Depression as a predictor of acute myocardial infarction.

A matched case-control study to determine the role of depression as a risk factor in the development of acute myocardial infarction.

Medic-GP Contact

For further information please visit the Medic-GP webpages or contact:

Katherine Duszynski
Data Analysis Unit Co-ordinator
Data Analysis Unit
Ph: +618 8303 3467
Email: katherine.duszynski@adelaide.edu.a

back to top


General Practice (GP) Vocabulary Project

Introduction and Background

In 1999 the General Practice Computing Group (GPCG) established a "Coding Jury". It had wide representation. The task of the Coding Jury was to select a single coding system that would be suitable for use in computerised general practice clinical systems. The Jury limited its scope to symptoms, findings, problems, reasons and diagnoses. In August 2000, the "Final Report of the General Practice Coding Jury" was published.

The GP Coding Jury recommended that ICD-10-AM, with the addition of specific and essential general practice terms, be adopted as the coding system to be used in general practice in Australia for the next five years. The long-term recommendation was that Australia should become involved in the development of SNOMED®CT. The Jury also emphasized the need to "flag" the terms used by general practitioners, thereby facilitating the presentation of more relevant "pick-lists". The report commented that intervention, pathology, radiology and medication terminologies were also important for General Practice - the "GP Vocabulary Project" resulted.

The Project Overview

The "GP Vocabulary Project" is an initiative of the General Practice Computing Group (GPCG) and has been funded by the Commonwealth Department of Health and Ageing (DoHA). It is designed to assist the building and support of a standard general practice terminology that is suitable for the management of information obtained during healthcare encounters - i.e. an "interface terminology". It has three stages:

  • Stage One: development of a consolidated GP Vocabulary, covering the domains of diagnosis and problems;
  • Stage Two: the mapping of a sub-set of the GP Vocabulary to reference terminologies such as SNOMED®CT, ICD-10-AM, ICPC2 and DOCLE; and
  • Stage Three: the completion of the remainder of the terminology.

Stage One of the GP Terminology Project commenced in June 2002.

The Purpose of Stage One of the Project

The purpose of stage one of the GP Vocabulary Project was to:

  1. facilitate mapping of GP interface terms to terminologies and classification systems such as SNOMED®CT, ICD-10-AM, ICPC2-Plus and DOCLE;
  2. enable the objective comparison and assessment of the content suitability for general practice of the above terminologies;
  3. enhance the user interfaces of terminologies;
  4. identify deficiencies in terminologies; and
  5. improve "terming" software.

A Final Report of Stage One of the GP Vocabulary Project (April 2003) (pdf 332kB) is available as a PDF document, please click on the hyperlink.

The Purpose of Stage Two of the Project

The purpose of stage two of the GP Vocabulary Project was to:

  1. Build a trial terminology for diabetes melitis;
  2. Examine and compare CATCH; DOCLE; ICD-10-AM; ICPC2 and SNOMED CT;
  3. Trial the linking of a sample of 1,000 GP Vocabulary terms to terms in each of the above target systems;
  4. Produce a plan for further linking of the GP Vocabulary; and
  5. Produce a demonstration “merged terminology”.

These were completed in order to:

  1. Explore and describe the process of building a terminology so as to inform others;
  2. Assess various terminologies and systems so as to inform others;
  3. Develop the tools, methods and skills necessary to link terms from different systems so as to inform others and be able to undertake like tasks;
  4. Estimate the time and costs involved in linking terms from different systems so estimates could be made of the cost and time taken for potential or real terminology work; and
  5. Provide some insight into possible strategies involving general practice terminology.

A Final Report of Stage Two of the GP Vocabulary Project (July 2004) (pdf 2MB) is available as a PDF document, please click on the hyperlink.

back to top

Current Publications Relating to the Project

Note: Documents may require the use of either Adobe Acrobat Reader (version 5.0.5 and above required) or WinZip - links are provided below to these programs. In addition, several of these documents are in the form of Microsoft PowerPoint presentations and require PowerPoint to be installed.

Get Adobe Acrobat PDF file reader
In order to read a PDF file, you will need Adobe's Acrobat Reader (version 5.0.5 and above required). If you do not have it already, click the logo to go to Adobe's download site. It's free!
In order to decompress files that end in a ".zip" extension, you will need a decompression utility such as WinZip. If you do not have it already, click the logo to download an evaluation copy.

back to top

Stage One Publications

This brief paper introduces and outlines the "GP Vocabulary Project"

160 KB

Adobe Acrobat Document

This document, "GP Vocabulary Project Communiqué", is the communiqué from the Department of Health and Ageing about the "GP Vocabulary Project, phase 1". It outlines the Department's requirements and the contractor's approach to these.

266 KB

Adobe Acrobat Document

A simple "frequently asked questions" style of power-point slide show that is partly "menu driven" - Updated January 2003.

339 KB

Microsoft Powerpoint Document

This "user reference" document offers a brief description of, and insight into, the semantic parsing software tool that will be used during the GP Vocabulary Project.

588 KB

Adobe Acrobat Document

A working demonstration of the software tools used in the project.(WARNING: Large File Size - 6 MB).

Please note that some of the 4D data files require login details, therefore enter the username as "user" and the password as "user" (all in lower case).

6 MB

ZIP Archive File

This "Data structure and sample data" document describes the data aspects of the GP Vocabulary Project. It is written with the computing industry in mind. The inclusion of adequate technical detail and data samples has been the intention.

1,793 KB

Adobe Acrobat Document

Sample data from the "Demo Semantic Parser & Browser", in text-file format.

149 KB

ZIP Archive File

This document describes in detail the "rules" that managed the punctuation characters in the original raw data used by the GP Vocabulary Project.

858 KB

Adobe Acrobat Document

A short paper about identifiers and their structure and use; zipped Word document

41 KB

ZIP Archive File

A demonstration database application containing the draft GP Vocabulary and utterances from which it was made. This demonstration software is based on the actual "Semantic-Parser & Browser Tool" built for the GP Vocabulary Project. Use the document "040: Getting Started with the Semantic Parser for GP Terms" (above) for help and explanation. (WARNING: Large File Size - 29 MB).

Please note that some of the 4D data files require login details, therefore enter the username as "user" and the password as "user" (all in lower case).

29 MB

ZIP Archive File

The data files exported from the above application. Data are in "text-file format". Basic documentation is included (see below). A more detailed description of the data is available in document "060: Data Structure & Sample Data" (above). (WARNING: Large File Size - 5 MB)

5 MB

ZIP Archive File
The data structure and definitions for the data files above; zipped Word document.

22 KB

ZIP Archive File

back to top

Stage Two Publications

2-01 Diabetic Terminology (pdf 2MB)

Description of the creation of the diabetic terminology, and the result.

1.7 MB

Adobe Acrobat Document

2-02-1 DOCLE Report (pdf 1MB)

Critique of DOCLE

1.3 MB

Adobe Acrobat Document

2-02-2 SNOMED-CT Report (pdf 756kB)

Critique of SNOMED CT

2.7 MB

Adobe Acrobat Document

2-02-2a Normal Forms (ppt 444kB)

Power-Point presentation explaining the various concept “forms” used in SNOMED CT

447 KB

2-02-3 ICD10AM-NCCH Report (pdf 319kB)

Critique of ICD-10-AM-NCCH

319 KB

Adobe Acrobat Document

2-02-4 ICPC2-Plus Report (pdf 400kB)

Critique of ICPC-2 Plus

401 KB

Adobe Acrobat Document

2-02-5 CATCH Report (pdf 421kB)

Critique of CATCH

422 KB

Adobe Acrobat Document

2-03-0 Comparative Analysis Report (pdf 454kB)

Comparing the terminologies (CATCH, DOCLE, ICD-10-AM-NCCH, ICPC-2 Plus, SNOMED).

454 KB

Adobe Acrobat Document

2-03-1 Comparative Analysis Chart (xls 75kB)

A tool to aid terminology comparison

75 KB

Microsoft Excel Document

2-04 Term Selection Report (pdf 2MB)

Description of the selection of a subset of GP terms from the GP Vocabulary

1.5 MB

Adobe Acrobat Document

2-05 Target System Analysis using Term Matching Techniques (pdf 2MB)

Analysing the terminologies (CATCH, DOCLE, ICD-10-AM-NCCH, ICPC-2 Plus, SNOMED) using the GP Vocabulary terms as the reference

2.4 MB

Adobe Acrobat Document

2-06-0 PAT Linking Notes (pdf 1MB)

Description of the linking of a subset of 1000 terms to the target terminologies

1.1 MB

Adobe Acrobat Document

2-06-1 PAT Getting Started (pdf 197kB)

Brief summary of the linking instructions

197 KB

Adobe Acrobat Document

2-06-2 Manual Linking Results (pdf 595kB)

The description of the results of manually linking 1,120 terms to the terms of the target systems, including a description of the linking table produced

596 KB

Adobe Acrobat Document

2-06-3 Manual Linking tables (xls 869kB)

The linking table generated by the linking process (These may also be referred to as the “mapping table”).

869 KB

Microsoft Excel Document

2-07 Validation of Linkage Data (pdf 576kB)

Description of the validation of the links made between GP terms and target system terms

577 KB

Adobe Acrobat Document

2-08 Future Plan (pdf 277kB)

What the future linking process might involve

277 KB

Adobe Acrobat Document

2-09-0 Merged Terms (pdf 497kB)

Description of the demonstration database of merged terms from the target systems

498 KB

Adobe Acrobat Document

2-09-1 Merged Terms (zip 38MB)

Browser holding the demonstration database of merged terms from the target systems – 284,180 terms (WARNING: Large File Size - 38 MB)

38 MB

ZIP Archive File

2-10 Final Report (pdf 2MB)

This final report document

1.6 MB

Adobe Acrobat Document

back to top

Additional Publications Relating to the Project

Ontology Tutorial (pdf 445kB)

Ontology Development 101: A Guide to Creating Your First Ontology. Authored by Natalya F. Noy and Deborah L. McGuinness

446 KB

Adobe Acrobat Document

Notes on the Basic Principles of a Coding System (pdf 293kB)

"Notes on the Basic Principles of a Coding System" offers a very brief description of the components of coding systems. It also touches on their design principles. Authored by Don Walker, 2000.

293 KB

Adobe Acrobat Document

Methods of Information in Medicine paper. Authored by J.J. Cimino, published 1989.

3.9 MB

Adobe Acrobat Document

back to top

GP Vocabulary Project Team

Project Director Dr. Don Walker
Clinical Consultants Prof. Justin Beilby
Dr. Don Walker
Dr. Patrick Walker
Dr. Peter Scott
Dr. Jonathon Newbury
Dr. Nigel Stocks
Dr. Ian Wilson
Dr. Mike Adams
Dr. Gary Rogers
Computing Consultants Dr. Don Walker
Dr. Patrick Walker
Terminology & Classification Consultants Dr. Don Walker
Assoc. Prof. Rosemary Roberts
Kerry Innes
Donna Truran

Semantic Parsers

Wendy Newbury
Trish Malbon
Eileen Scott
Kerri Chalmers
Alex Canduci
Patricia Saad
Term Linkers Margaret Campbell
Kerri Doyle
Katherine Duszynski
Andrew Klisanin
Patricia Saad
Dr Peter Scott
Statistician Consultant Heather McElroy
Administrator & Personnel Manager Katherine Duszynski
Publication Consultant Andre Duszynski
Technical Support Peter Beilby

 

Acknowledgements

Commonwealth Department of Health and Ageing
General Practice Computing Group (GPCG)
General Practice Research Network (GPRN)
National Centre for Classification in Health (NCCH)

back to top

 


Introduction to Drug Dose-Forms in the Poly-browser and Authoring Tool (PAT)

A committee of HL7 is working on the analysis and unification of the many dose-forms described for drug usage.

At the September 2004 HL7 workshop the task of providing a tool that would assist the work of uniquely defining each dose-form by its relationships was given to Don Walker (Australia). Bill Hess (USA) was repsonsible for collecting and collating a comprehensive list of dose-forms. Julie James (UK) allocated defining-features to each dose-form. The paper Principles for Modelling the Dose Form Vocabulary elaborates on this.

By December 2004, the Poly-browser and Authoring Tool (PAT) contained all the dose-forms (as a “terminology”) extracted from Bill’s original compilation by Julie. Bill’s data was included in the PAT and linked to appropriate dose-form concepts.

The PAT contains tools that help in the creation of defining-concept-relationships. These are described in the PAT Concept Definitions Tools document.

The work needed to uniquely identify concepts by their relationships has yet to be done.

The following are the above referred documents and a stand alone, single user, zipped version of the PAT containing drug-dose-forms and data provided by Julie James and Bill Hess.

 

Introduction (pdf 61kB) Introduction to Drug Dose-Forms in the
Poly-browser and Authoring Tool (PAT)

61 KB

Adobe Acrobat Document

The Poly-browser and Authoring Tool (PAT), dose-form terminology and associated data; Read Me enclosed
(WARNING: Large File Size - 9.4 MB)

9.4 MB

ZIP Archive File

Brief help related to unique defining relationship tools provided by the Poly-browser and Authoring Tool (PAT)

342 KB

Adobe Acrobat Document

The thinking behind the HL7 drug dose-form terminology

189 KB

Adobe Acrobat Document

back to top


AMDT Demonstration 4

The following file “AMDT Demonstration 4” for the National E-Health Transition Authority (NEHTA) relates to:

  1. “Virtual drug names” and,
  2. “AMDT Example”.
Posted: 22nd of August 2005
File size: 34 MB
Password: A password is required to extract the contents of the ZIP archive

 

AMDT Demo 4 (zip 33MB)

"AMDT Demonstration 4" for the National E-Health Transition Authority (NEHTA)
(WARNING: Large File Size - 31 MB)

Please note that the file contents are password protected

34 MB

Adobe Acrobat Document

back to top