CHEM 3214PE - Medicinal and Biological Chemistry III
North Terrace Campus - Semester 2 - 2015
General Course Information
Course Code CHEM 3214PE Course Medicinal and Biological Chemistry III Coordinating Unit School of Physical Sciences Term Semester 2 Level Undergraduate Location/s North Terrace Campus Units 3 Contact Up to 9 hours per week Available for Study Abroad and Exchange Y Prerequisites CHEM 2510 & CHEM 2540 Assumed Knowledge CHEM 3111 Restrictions Available to BE(Pharmaceutical) students only Course Description An introduction to the principles of medicinal chemistry including natural product isolation, lead generation, lead optimisation and quantitative structure-activity relationships will be presented. The principles of parallel and combinatorial synthesis will be described in this context. Applications of mass spectrometry, and other techniques to the structure determination of biologically important molecules (particularly proteins) will be discussed. The chemistry of a number of key biological processes (e.g. enzyme chemistry, action of antibiotics on membranes etc.) will also be presented, including an introduction to the arena of biomimetic organic chemistry. This section will emphasise how the principles of nature can be applied to the rational design of complex molecules. Bioinorganic chemistry will be presented, with a focus on electron transfer reactions in biological systems. Marcus theory of electron transfer will be introduced. Examples of electron transfer proteins will be given, including those containing haem moieties, copper centres, and iron sulfer clusters, and the importance of these proteins will be discussed, including their roles in the mitochondrial respiratory electron transfer chain.
Course Coordinator: Associate Professor David Huang
The full timetable of all activities for this course can be accessed from Course Planner.
Course Learning Outcomes
1 Apply knowledge of synthetic bioorganic chemistry to the design of bioactive compounds. 2 Understand the mechanisms for biological activity and key biological reactions. 3 Understand the theory and importance of electron transfer in biological systems. 4 Describe the types of electron transfer centres and proteins that are commonly used to tightly regulate electron transfer in biology. 5 Explain the workings of the pharmaceutical industry. 6 Explain the design of protease inhibitors and their potential use as pharmaceuticals. 7 Interpret mass spectra to determine peptide and protein structure. 8 Undertake laboratory investigations using appropriate apparatus. 9 Conduct, analyse and interpret results of an experiment, and effectively communicate these in written reports.
University Graduate Attributes
This course will provide students with an opportunity to develop the Graduate Attribute(s) specified below:
University Graduate Attribute Course Learning Outcome(s) Knowledge and understanding of the content and techniques of a chosen discipline at advanced levels that are internationally recognised. 1-9 The ability to locate, analyse, evaluate and synthesise information from a wide variety of sources in a planned and timely manner. 1, 2, 3, 5, 6, 9 An ability to apply effective, creative and innovative solutions, both independently and cooperatively, to current and future problems. 1, 2, 6, 7, 9 Skills of a high order in interpersonal understanding, teamwork and communication. 8, 9 A proficiency in the appropriate use of contemporary technologies. 1-9 A commitment to continuous learning and the capacity to maintain intellectual curiosity throughout life. 2, 3, 4, 5, 9 A commitment to the highest standards of professional endeavour and the ability to take a leadership role in the community. 1-9 An awareness of ethical, social and cultural issues within a global context and their importance in the exercise of professional skills and responsibilities. 5, 9
Required ResourcesThere is no prescribed text for this course.
- ‘Organic Chemistry’ (Bruice, 5th Edition, Pearson Education, 2007)
- ‘Organic Chemistry’ (Clayden, Greeves, Warren and Wothers, Oxford University Press, 2001)
- ‘Inorganic Chemistry’ (Shriver & Atkins, 5th Edition, Oxford University Press, 2010)
- 'Inorganic Chemistry' (Housecroft & Sharp, 4th Edition, Pearson, 2012)
- ‘Physical Chemistry’ (Atkins, 8th Edition, Oxford University Press, 2006)
- ‘A Guide to Lasers in Chemistry’ (Van Hecke & Karukstis, Jones & Bartlett, 1998)
- 'Spectrometric Identification of Organic Compounds' (Silverstein, 7th Edition, Wiley Press, 2005)
- 'SI Chemical Data' (Aylward, 6th Edition, Wiley Press, 2007)
- ‘Modern Physical Organic Chemistry’ (Ansyln and Dougherty, University Science Books)
- ‘Molecular Spectroscopy’ (Banwell, 4th Ed., McGraw Hill, 1994) out of print
All of these texts (except where noted) are available for purchase from UniBooks and all are available for loan from the Barr Smith library. Some are also available for consultation in the Chemistry Resource Centre (Rm 120, Johnson Laboratories).
References to other material and recent literature will be given in lectures.
The Maths Learning Centre (MLC) helps all students learn and use the maths they need at uni. The MLC offers seminars, workshops, online, and print resources. It also run a drop-in room in Hub Central from 10am to 4pm Monday to Friday during teaching weeks. For more information, visit http://www.adelaide.edu.au/mathslearning/
For chemistry-specific maths help, visit http://www.adelaide.edu.au/mathslearning/resources/chem/
Online LearningMyUni: Teaching materials and course documentation will be posted on the MyUni website (http://myuni.adelaide.edu.au/).
Learning & Teaching Activities
Learning & Teaching ModesLectures 12 x 2-hour sessions with one session per week
Practicals 8 x 6-hour sessions with one session per week
Tutorials 11 x 50-minute sessions with one session per week
The information below is provided as a guide to assist students in engaging appropriately with the course requirements.A student enrolled in a 3 unit course, such as this, should expect to spend, on average 12 hours per week on the studies required. This includes both the formal contact time required to the course (e.g., lectures and practicals), as well as non-contact time (e.g., reading and revision).
Learning Activities SummaryCoursework
Biological Structure Determination
Practical exercises will provide students with "hands on" experience in the quantitative use of various analytical methods. In addition, students will be involved in the analysis of "real world" chemical samples.
Tutorials will be used to reinforce the concepts introduced in lectures through a combination of quantitative problem solving (what is present, and in what quantity), a discussion of the operational principles, including the strengths and weaknesses of various quantitative chemical methods, and consideration of appropriate possible solutions to chemical problems that have been identified through quantitative chemical analysis.
The University's policy on Assessment for Coursework Programs is based on the following four principles:
- Assessment must encourage and reinforce learning.
- Assessment must enable robust and fair judgements about student performance.
- Assessment practices must be fair and equitable to students and give them the opportunity to demonstrate what they have learned.
- Assessment must maintain academic standards.
Assessment Task Task Type Weighting Hurdle
Yes or No
Learning Outcome Practical Formative & Summative 30% Yes (50%) 1-9 Exam Summative 70% Yes (45%) 1-7
Assessment Related Requirements
Practical work is compulsory – This includes attendance, conduct of required experimental work, attendance at demonstrator interviews (as required) and submission of laboratory reports. Practical work constitutes 30% of the total assessment.
To pass this course students must:
- Attain a minimum of 50% for the practical reports:
Students who do not attain this minimum requirement will not be offered an additional assessment.
- Attain a minimum of 45% for the exam:
Students who attain a final course grade of at least 45% but do not attain a minimum of 45% for the exam may be offered an Additional Academic Exam during the Replacement/Additional Assessment period, in line with the Modified Arrangements for Coursework Assessment Policy.
The end-of-semester examination will be based primarily on lecture/tutorial material. Students must sit the exam and achieve a minimum mark of 45% in order to pass the course.
The laboratory course is worth 30% of your assessment at Level 3. Attendance at practical sessions is compulsory, and students must achieve a minimum overall mark of 50% for the practical component to pass the course.
Submission of Assigned Work
Coversheets must be completed and attached to all submitted work. Coversheets can be obtained from the School Office (room G33 Physics) or from MyUNI. Work should be submitted via the assignment drop box at the School Office.
Extensions for Assessment Tasks
Extensions of deadlines for assessment tasks may be allowed for reasonable causes. Such situations would include compassionate and medical grounds of the severity that would justify the awarding of a supplementary examination. Evidence for the grounds must be provided when an extension is requested. Students are required to apply for an extension to the Course Coordinator before the assessment task is due. Extensions will not be provided on the grounds of poor prioritising of time. The assessment extension application form can be obtained from: http://www.sciences.adelaide.edu.au/current/
Late submission of assessments
If an extension is not applied for, or not granted then a penalty for late submission will apply. A penalty of 10% of the value of the assignment for each calendar day that is late (i.e. weekends count as 2 days), up to a maximum of 50% of the available marks will be applied. This means that an assignment that is 5 days or more late without an approved extension can only receive a maximum of 50% of the mark.
Grades for your performance in this course will be awarded in accordance with the following scheme:
M10 (Coursework Mark Scheme) Grade Mark Description FNS Fail No Submission F 1-49 Fail P 50-64 Pass C 65-74 Credit D 75-84 Distinction HD 85-100 High Distinction CN Continuing NFE No Formal Examination RP Result Pending
Further details of the grades/results can be obtained from Examinations.
Grade Descriptors are available which provide a general guide to the standard of work that is expected at each grade level. More information at Assessment for Coursework Programs.
Final results for this course will be made available through Access Adelaide.
The University places a high priority on approaches to learning and teaching that enhance the student experience. Feedback is sought from students in a variety of ways including on-going engagement with staff, the use of online discussion boards and the use of Student Experience of Learning and Teaching (SELT) surveys as well as GOS surveys and Program reviews.
SELTs are an important source of information to inform individual teaching practice, decisions about teaching duties, and course and program curriculum design. They enable the University to assess how effectively its learning environments and teaching practices facilitate student engagement and learning outcomes. Under the current SELT Policy (http://www.adelaide.edu.au/policies/101/) course SELTs are mandated and must be conducted at the conclusion of each term/semester/trimester for every course offering. Feedback on issues raised through course SELT surveys is made available to enrolled students through various resources (e.g. MyUni). In addition aggregated course SELT data is available.
- Academic Support with Maths
- Academic Support with writing and speaking skills
- Student Life Counselling Support - Personal counselling for issues affecting study
- International Student Support
- AUU Student Care - Advocacy, confidential counselling, welfare support and advice
- Students with a Disability - Alternative academic arrangements
- Reasonable Adjustments to Teaching & Assessment for Students with a Disability Policy
Policies & Guidelines
This section contains links to relevant assessment-related policies and guidelines - all university policies.
- Academic Credit Arrangement Policy
- Academic Honesty Policy
- Academic Progress by Coursework Students Policy
- Assessment for Coursework Programs
- Copyright Compliance Policy
- Coursework Academic Programs Policy
- Elder Conservatorium of Music Noise Management Plan
- Intellectual Property Policy
- IT Acceptable Use and Security Policy
- Modified Arrangements for Coursework Assessment
- Student Experience of Learning and Teaching Policy
- Student Grievance Resolution Process
Students are reminded that in order to maintain the academic integrity of all programs and courses, the university has a zero-tolerance approach to students offering money or significant value goods or services to any staff member who is involved in their teaching or assessment. Students offering lecturers or tutors or professional staff anything more than a small token of appreciation is totally unacceptable, in any circumstances. Staff members are obliged to report all such incidents to their supervisor/manager, who will refer them for action under the university's student’s disciplinary procedures.
The University of Adelaide is committed to regular reviews of the courses and programs it offers to students. The University of Adelaide therefore reserves the right to discontinue or vary programs and courses without notice. Please read the important information contained in the disclaimer.